View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_123 (Length: 363)
Name: NF20384_low_123
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_123 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 2821198 - 2821545
Alignment:
| Q |
1 |
cttcacgagaattattaaaacaagtagaatgtgttaggaacataccaaccccagaaggaccagtcagggaaaacaatatcttgtgtccaccgatcagcac |
100 |
Q |
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| T |
2821198 |
cttcacgagaattattaaaacaagtagaatgtgttaggaacataccaaccccagaaggaccagtcagggaaaacaatatcttgtgtccaccgatcagcac |
2821297 |
T |
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| Q |
101 |
agtaaccaaaaacaggtggtgggtccaagccaatgggcacaacaggcttatcattgcaatcaaacatgagttccaagtctggaattttaccagggtactt |
200 |
Q |
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| T |
2821298 |
agtaaccaaaaacaggtggtgggtccaagccaatgggcacaacaggcttatcattgcaatcaaacatgagttccaagtctggaattttaccagggtactt |
2821397 |
T |
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| Q |
201 |
tctcagtaattgcagaataccccaaacggtgaaaacatcacgtgtttgtatagcttctttgttcttgtatttctctaaatacccttttccattttttacc |
300 |
Q |
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| T |
2821398 |
tctcagtaattgcagaataccccaaacggtgaaaacatcacgtgtttgtatagcttctttgttcttgtatttctctaaatacccttttccattttttacc |
2821497 |
T |
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| Q |
301 |
accaacctaaaatgcgccgttttctttgccttttccaccatttctctg |
348 |
Q |
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| T |
2821498 |
accaacctaaaatgcgccgttttctttgccttttccaccatttctctg |
2821545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 11808895 - 11808810
Alignment:
| Q |
139 |
acaacaggcttatcattgcaatcaaacatgagttccaagtctggaattttaccagggtactttctcagtaattgcagaatacccca |
224 |
Q |
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| T |
11808895 |
acaacaggcttatcttcacaatcaaacataagttccaaatcaggcaacttgccagggtacaatctcaataattgcaaaatacccca |
11808810 |
T |
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