View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_13 (Length: 659)
Name: NF20384_low_13
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 235 - 644
Target Start/End: Original strand, 19821975 - 19822384
Alignment:
| Q |
235 |
ccacataaatggattacaacaacaaagataagtatttttcttcccccttttctctcnnnnnnnccaatcctctgctaaactttgtgtgaaatgcaaaata |
334 |
Q |
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| T |
19821975 |
ccacataaatggattacaacaacaaagataagtatttttcttcccccttttctctctttttttccaatcctctgctaaactttgtgtgaaatgcaaaata |
19822074 |
T |
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| Q |
335 |
aaacattgataaaactaaaaggctgattcaaactaaaagaatatttggatgaggttttattagctatggattaatttgaaaagcattatttggtttctac |
434 |
Q |
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| T |
19822075 |
aaacattgataaaactaaaaggctgattcaaactaaaagaatatttggatgaggttttattagctatgtattaatttgaaaagcattatttggtttctac |
19822174 |
T |
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| Q |
435 |
tttttcctacactctcttttaaaatttgaaaaaaccgttatagcaatgaggggatatccatgattgcaagggtaatacaattctgaaccgtttatttatt |
534 |
Q |
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| T |
19822175 |
tttttcctacactctcttttaaaatttgaaaaaaccgttatagcaatgaggggatatccatgattgcatgggtaatacaattctaaaccgtttatttatt |
19822274 |
T |
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| Q |
535 |
tcannnnnnnnattataagaacatacgtgtttacttcaattaattttataaatagtgactttgatgtgtaaaatatgcttttgattaatttttgtctgat |
634 |
Q |
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| T |
19822275 |
tcattttttttattataagaacatacgtgtttacttcaattaattttataaatagtgactttgatgtgtaaaatatgcttttgattaatttttgtctgat |
19822374 |
T |
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| Q |
635 |
ttgtgttaat |
644 |
Q |
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| T |
19822375 |
ttgtgttaat |
19822384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 19821641 - 19821817
Alignment:
| Q |
18 |
attttaaagtaggagtaaaatgtttgttagagtgggggtgtcgaatgttcaaaaatgttttatatcgagaagtttgactctaattctcggtgtaaaatat |
117 |
Q |
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| T |
19821641 |
attttaaagtaggagtaaaatgtttgttagagtggaggtgtcgaatgttcaaaaatgttttacactaagaagttagactctaattctcgatgtagaatat |
19821740 |
T |
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| Q |
118 |
tgatggatctttcgacacttcagactctaacaaatcttttactccccacttttgaatcataagtagtatttctcatc |
194 |
Q |
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| T |
19821741 |
tgatggatctttcgacactccagactctaacaaatcttttactccccacttttgaatcataggtagtatttctcatc |
19821817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 19821964 - 19821903
Alignment:
| Q |
213 |
ctgttttgttgttgctgtgctgccacataaatggattacaacaacaaagataagtatttttc |
274 |
Q |
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| T |
19821964 |
ctgttttgttgttgctgtgctgccacataaatggattacaacaacaaagataagtatttttc |
19821903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 19897187 - 19897227
Alignment:
| Q |
250 |
acaacaacaaagataagtatttttcttcccccttttctctc |
290 |
Q |
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| T |
19897187 |
acaataacaaagacaagtatttttcttcccccttttctctc |
19897227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 426
Target Start/End: Original strand, 2972981 - 2973043
Alignment:
| Q |
364 |
aaactaaaagaatatttggatgaggttttattagctatggattaatttgaaaagcattatttg |
426 |
Q |
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|||| |||| |||||| |||| |||||| | ||||||||| ||||||||||||||||||||| |
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| T |
2972981 |
aaaccaaaacaatattaagatggggttttctcagctatggactaatttgaaaagcattatttg |
2973043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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