View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_low_132 (Length: 355)
Name: NF20384_low_132
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_132 |
 | |
|
| [»] chr5 (5 HSPs) |
| |
|
| [»] chr4 (11 HSPs) |
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| [»] chr2 (4 HSPs) |
| |
|
| [»] chr6 (7 HSPs) |
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| [»] chr3 (6 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 355
Target Start/End: Original strand, 41722878 - 41723214
Alignment:
| Q |
20 |
attgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggctttgcaattta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41722878 |
attgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggttttgcaattta |
41722977 |
T |
|
| Q |
120 |
ccattcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722978 |
ccattcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttac |
41723077 |
T |
|
| Q |
220 |
ggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagag-aaaaata |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41723078 |
ggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaata |
41723177 |
T |
|
| Q |
319 |
tagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723178 |
tagagaggaaaaatagtttctcctgtgaggtttctcc |
41723214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 22 - 355
Target Start/End: Original strand, 41718154 - 41718488
Alignment:
| Q |
22 |
tgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggctttgcaatttacc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41718154 |
tgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggttttgcaatttacc |
41718253 |
T |
|
| Q |
122 |
attcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttacgg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718254 |
attcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttacgg |
41718353 |
T |
|
| Q |
222 |
tcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagag-aaaaatata |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41718354 |
tcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatata |
41718453 |
T |
|
| Q |
321 |
gagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718454 |
gagaggaaaaatagtttctcctgtgaggtttctcc |
41718488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 256 - 355
Target Start/End: Original strand, 34352226 - 34352326
Alignment:
| Q |
256 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctc |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| |||||| |
|
|
| T |
34352226 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagagaaaaattagtttctcctgtgagatttctc |
34352325 |
T |
|
| Q |
355 |
c |
355 |
Q |
| |
|
| |
|
|
| T |
34352326 |
c |
34352326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 256 - 355
Target Start/End: Original strand, 34359934 - 34360034
Alignment:
| Q |
256 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctc |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| |||||| |
|
|
| T |
34359934 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagagaaaaattagtttctcctgtgagatttctc |
34360033 |
T |
|
| Q |
355 |
c |
355 |
Q |
| |
|
| |
|
|
| T |
34360034 |
c |
34360034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 256 - 355
Target Start/End: Complemental strand, 29585640 - 29585539
Alignment:
| Q |
256 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgaga-gaaaaatatagagaggaaaaatagtttctcctgtgaggtttct |
353 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| ||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
29585640 |
tcatcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttct |
29585541 |
T |
|
| Q |
354 |
cc |
355 |
Q |
| |
|
|| |
|
|
| T |
29585540 |
cc |
29585539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 188 - 355
Target Start/End: Complemental strand, 48702228 - 48702060
Alignment:
| Q |
188 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
287 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48702228 |
ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
48702129 |
T |
|
| Q |
288 |
taaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48702128 |
taaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
48702060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 188 - 355
Target Start/End: Complemental strand, 48697539 - 48697371
Alignment:
| Q |
188 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
287 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697539 |
ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcattattctactcatcccaaatcagtaacaacacaagaacaag |
48697440 |
T |
|
| Q |
288 |
taaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697439 |
taaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
48697371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 257 - 355
Target Start/End: Complemental strand, 24520363 - 24520264
Alignment:
| Q |
257 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520363 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
24520264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 42265883 - 42265981
Alignment:
| Q |
258 |
atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42265883 |
atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcc |
42265981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 42270602 - 42270700
Alignment:
| Q |
258 |
atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42270602 |
atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcc |
42270700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 286
Target Start/End: Complemental strand, 30945901 - 30945803
Alignment:
| Q |
188 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaa |
286 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
30945901 |
ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacaccagaacaa |
30945803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 188 - 278
Target Start/End: Complemental strand, 30950607 - 30950517
Alignment:
| Q |
188 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacac |
278 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30950607 |
ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacac |
30950517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 10427323 - 10427367
Alignment:
| Q |
311 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10427323 |
gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcc |
10427367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 30945761 - 30945717
Alignment:
| Q |
311 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
30945761 |
gaaaaatatagagagaaaaattagtttctcctgtgaggtttctcc |
30945717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 30950467 - 30950423
Alignment:
| Q |
311 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
30950467 |
gaaaaatatagagagaaaaattagtttctcctgtgaggtttctcc |
30950423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 48781266 - 48781360
Alignment:
| Q |
72 |
ttttcacatggcagtaatacatgtttgacaaaagggc--tttgcaatttaccattcagattttcggtgccaacattgtcaacataaattggttggc |
165 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||| ||||| ||||| |||| | ||||| ||||| | ||| ||||||||||||||||||| |
|
|
| T |
48781266 |
ttttcacatggcagtaaaaggtgtttgacgaaagggctttttgc-atttaacatttatatttttggtgcatatattttcaacataaattggttggc |
48781360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 188 - 355
Target Start/End: Complemental strand, 5199062 - 5198894
Alignment:
| Q |
188 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
287 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5199062 |
ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
5198963 |
T |
|
| Q |
288 |
taaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198962 |
taaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
5198894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 830209 - 830263
Alignment:
| Q |
302 |
atagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
830209 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcc |
830263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 825553 - 825607
Alignment:
| Q |
302 |
atagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |||||||||||| ||||||||||| |
|
|
| T |
825553 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgcgaggtttctcc |
825607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 355
Target Start/End: Complemental strand, 30397179 - 30397139
Alignment:
| Q |
315 |
aatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
30397179 |
aatatagagaggaaatatagtttctcctgtgagatttctcc |
30397139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 256 - 355
Target Start/End: Complemental strand, 26976470 - 26976370
Alignment:
| Q |
256 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976470 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc |
26976371 |
T |
|
| Q |
355 |
c |
355 |
Q |
| |
|
| |
|
|
| T |
26976370 |
c |
26976370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 257 - 355
Target Start/End: Original strand, 1234680 - 1234779
Alignment:
| Q |
257 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234680 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
1234779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 27874327 - 27874229
Alignment:
| Q |
258 |
atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27874327 |
atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcc |
27874229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 286
Target Start/End: Complemental strand, 27879134 - 27879036
Alignment:
| Q |
188 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaa |
286 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
27879134 |
ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacaccagaacaa |
27879036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 27878994 - 27878950
Alignment:
| Q |
311 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
27878994 |
gaaaaatatagagagaaaaattagtttctcctgtgaggtttctcc |
27878950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 6174333 - 6174292
Alignment:
| Q |
301 |
gatagtgagagaaaaatatagagaggaaaaatagtttctcct |
342 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
6174333 |
gatagtgagagaaaaatatagaaaggaaatatagtttctcct |
6174292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 18967920 - 18967964
Alignment:
| Q |
311 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||||||||||||| |
|
|
| T |
18967920 |
gaaaaatataaagaggaaatatagtttctcttgtgaggtttctcc |
18967964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 256 - 355
Target Start/End: Complemental strand, 5818852 - 5818752
Alignment:
| Q |
256 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818852 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc |
5818753 |
T |
|
| Q |
355 |
c |
355 |
Q |
| |
|
| |
|
|
| T |
5818752 |
c |
5818752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 257 - 355
Target Start/End: Complemental strand, 5823613 - 5823514
Alignment:
| Q |
257 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823613 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
5823514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 188 - 342
Target Start/End: Complemental strand, 2817658 - 2817502
Alignment:
| Q |
188 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
287 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2817658 |
ataaatgcaattggttggggcatggctctttcactagtatacatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
2817559 |
T |
|
| Q |
288 |
taaagcttgttta-gatagtgagag-aaaaatatagagaggaaaaatagtttctcct |
342 |
Q |
| |
|
|||| |||||||| | || |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2817558 |
taaaacttgtttagggtaatgagagaaaaaatatagagaggaaaaatagtttctcct |
2817502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 24671293 - 24671249
Alignment:
| Q |
311 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24671293 |
gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcc |
24671249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 4579134 - 4579177
Alignment:
| Q |
311 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctc |
354 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4579134 |
gaaaaatatagagaggaaatatagtttctcctgtgaggtttctc |
4579177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 54545906 - 54545960
Alignment:
| Q |
302 |
atagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
54545906 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcc |
54545960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 257 - 355
Target Start/End: Complemental strand, 9439710 - 9439611
Alignment:
| Q |
257 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439710 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
9439611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 257 - 355
Target Start/End: Complemental strand, 9444430 - 9444331
Alignment:
| Q |
257 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga-aaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444430 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
9444331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 27500 - 27456
Alignment:
| Q |
311 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27500 |
gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcc |
27456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 16183905 - 16183861
Alignment:
| Q |
311 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16183905 |
gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcc |
16183861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 46191274 - 46191318
Alignment:
| Q |
311 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcc |
355 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46191274 |
gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcc |
46191318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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