View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_133 (Length: 354)
Name: NF20384_low_133
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_133 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 7885207 - 7884882
Alignment:
| Q |
13 |
aaaataatggtttctattgtctatcatccattttagaagatcttcagaatactcaacgtctttgggtgaaatgtgattcacaagctcaacttaatcaaac |
112 |
Q |
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| T |
7885207 |
aaaataatagtttctattgtctatcatccattttagaagatcttcagaatactcaacgtctttgggtgaaatgtgattcacaagctcaacttaatcaaac |
7885108 |
T |
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| Q |
113 |
tatagcaagtattttatatagcttcaatactcaaaattgtgagggattctcaaatattgggacttcagcctcaagttttcgtcgcactcaagtttgtaat |
212 |
Q |
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| T |
7885107 |
tgtagcaagtattttatatagcttcaacactcaaaattgtgagggattctcaaatattgagacttcagcatcaaattttcgtcgcactcaagtttgtatt |
7885008 |
T |
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| Q |
213 |
tcaagctcaaaaaattcagtaacttcccttttgattgaaatgggagtgagctgcgatgtcacaaacattcttagagaaaatattttgcaggttatctctt |
312 |
Q |
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| T |
7885007 |
tccagctcaaaaaattcagtaacttcccttttgattgaaatgggagtgagctgcgatgtcgcaaacattcttagagaaaatattttgcaggttatctctt |
7884908 |
T |
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| Q |
313 |
tctcctgcccttattcacaaacacaa |
338 |
Q |
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| T |
7884907 |
tctcctgcccttattcacaaacacaa |
7884882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 149 - 325
Target Start/End: Original strand, 21228417 - 21228593
Alignment:
| Q |
149 |
ttgtgagggattctcaaatattgggacttcagcctcaagttttcgtcgcactcaagtttgtaattcaagctcaaaaaattcagtaacttcccttttgatt |
248 |
Q |
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| T |
21228417 |
ttgtgagggattctcaaatatcgggacttggacatcaattgattgtcacagtcaagtttgtatttcaagctcaaaaagttccttgacatcccttttgatt |
21228516 |
T |
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| Q |
249 |
gaaatgggagtgagctgcgatgtcacaaacattcttagagaaaatattttgcaggttatctctttctcctgccctta |
325 |
Q |
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| T |
21228517 |
caaatgggaatgagctgcgatgtcaccaacattcttacagaaaatattttgcaggttctctttttctccttccctta |
21228593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 10035448 - 10035514
Alignment:
| Q |
261 |
agctgcgatgtcacaaaca---ttcttagagaaaatattttgcaggttatctctttctcctgccctt |
324 |
Q |
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| T |
10035448 |
agctgcgatgtcaccaacaaccttcttacagaaaatattttgcaggttctctctttctccttccctt |
10035514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 18935687 - 18935763
Alignment:
| Q |
49 |
aagatcttcagaatactcaacgtctttgggtgaaatgtgattcacaagctcaacttaatcaaactatagcaagtatt |
125 |
Q |
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| T |
18935687 |
aagatcttcagaatcttcaacgtctttggttggaatgtgagtcagaagctcaactaaatcaagctgttgcaagtatt |
18935763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 34724366 - 34724290
Alignment:
| Q |
49 |
aagatcttcagaatactcaacgtctttgggtgaaatgtgattcacaagctcaacttaatcaaactatagcaagtatt |
125 |
Q |
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||||||||| |||| |||||| |||||| | ||||| | ||| |||||||||| ||||||||| ||||||||||| |
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| T |
34724366 |
aagatcttccgaatcttcaacgcctttggtttaaatgcaagtcagaagctcaactaaatcaaactctagcaagtatt |
34724290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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