View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_low_134 (Length: 353)
Name: NF20384_low_134
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_134 |
 | |
|
| [»] scaffold0012 (2 HSPs) |
| | |
|
| [»] scaffold0573 (1 HSPs) |
| | |
|
| [»] scaffold0007 (3 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 12589353 - 12589672
Alignment:
| Q |
18 |
aacatgtgacgtcgcttttgaatgttgggtctgatgatactgcccaaagggtagggctccatgggattggtggaatagggaaaactactcttgctctaga |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12589353 |
aacatgtgacttcgcttttgaatgttgggtctgatgatactgtccacatggtagggatccatgggattggtggaatagggaaaactactcttgctctaga |
12589452 |
T |
|
| Q |
118 |
agtttataattcagttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctgagaaaaatgggttgatatatctccaaaagatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12589453 |
agtttataattcagttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctgagaaaaatgggttgatatatctccaaaagatc |
12589552 |
T |
|
| Q |
218 |
cttctgtctcaaattcttggagagaaggacatggagttaacaagtgttggacaaggaatttcaatattacaacaaaggctccgccaaaagaaggttcttt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12589553 |
cttctgtctcaaattcttggagagaaggacatggagttaacaagtgttggacaaggaatgtcaatattacaacaaaggctccgccaaaagaaggttcttt |
12589652 |
T |
|
| Q |
318 |
tgcttctagacgatgttgac |
337 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
12589653 |
tgcttctagacgatgttgac |
12589672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 155 - 336
Target Start/End: Original strand, 31905872 - 31906053
Alignment:
| Q |
155 |
tgttttcttgaaaaagttagagaaaattctgagaaaaatgggttgatatatctccaaaagatccttctgtctcaaattcttggagagaaggacatggagt |
254 |
Q |
| |
|
|||||||||||||| || ||||||||||| | ||| | ||||| | ||||||||||||| ||||| || ||| |||||||| ||| | || ||| |
|
|
| T |
31905872 |
tgttttcttgaaaatgtgagagaaaattcaaataaacacgggttacaacatctccaaaagattcttctttcagaaacccttggagaaaagaaaattaagt |
31905971 |
T |
|
| Q |
255 |
taacaagtgttggacaaggaatttcaatattacaacaaaggctccgccaaaagaaggttcttttgcttctagacgatgttga |
336 |
Q |
| |
|
|||||||||| |||||||||||||||| || | || || |||| ||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
31905972 |
taacaagtgtcaaacaaggaatttcaataataaagcacagactccaacaaaaaaaggttcttttgattctagatgatgttga |
31906053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 337
Target Start/End: Original strand, 35984117 - 35984299
Alignment:
| Q |
155 |
tgttttcttgaaaaagttagagaaaattctgagaaaaatgggttgatatatctccaaaagatccttctgtctcaaattcttggagagaaggacatggagt |
254 |
Q |
| |
|
|||||||||||||| || ||||||||||| || ||| | ||||| | ||||||||||||| ||||| || ||| |||||||||||| | || ||| |
|
|
| T |
35984117 |
tgttttcttgaaaacgtgagagaaaattcagacaaacacgggttacaacatctccaaaagattcttctctcagaaacacttggagagaagaaaattaagt |
35984216 |
T |
|
| Q |
255 |
taacaagtgttggacaaggaatttcaatattacaacaaaggctccgccaaaagaaggttcttttgcttctagacgatgttgac |
337 |
Q |
| |
|
|||||| ||| ||||||||||||| | || | || || |||| ||||| || ||||||||| ||||||| ||||||||| |
|
|
| T |
35984217 |
taacaaatgtcaaacaaggaatttcagtgataaagcatagactccagcaaaaaaaagttcttttgattctagatgatgttgac |
35984299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 28491057 - 28490738
Alignment:
| Q |
18 |
aacatgtgacgtcgcttttgaatgttgggtctgatgatactgcccaaagggtagggctccatgggattggtggaatagggaaaactactcttgctctaga |
117 |
Q |
| |
|
|||| ||||| || |||||||||||||| ||||||||| | ||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28491057 |
aacacgtgacttcacttttgaatgttggatctgatgatgcaatccatatggtagggatccatgggattggtggaatagggaaaactactcttgctctaga |
28490958 |
T |
|
| Q |
118 |
agtttataattcagttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctgagaaaaatgggttgatatatctccaaaagatc |
217 |
Q |
| |
|
||||||||| || ||||||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
28490957 |
agtttataactctattgtctgtcaatttcaaggttcctgttttcttgaaaaagtaagagaaaattcagacaaaaatgggttgatatatctccaaaagatc |
28490858 |
T |
|
| Q |
218 |
cttctgtctcaaattcttggagagaaggacatggagttaacaagtgttggacaaggaatttcaatattacaacaaaggctccgccaaaagaaggttcttt |
317 |
Q |
| |
|
||| ||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| || |||| ||||||||||| |||||||||| |||||| |
|
|
| T |
28490857 |
cttttgtctcaaatttttggagagaagaacattgagttaacaagtgttggacaaggaatttccatgttacgacaaaggctccaccaaaagaagattcttt |
28490758 |
T |
|
| Q |
318 |
tgcttctagacgatgttgac |
337 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
28490757 |
tgcttctagatgatgttgac |
28490738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 29803467 - 29803148
Alignment:
| Q |
18 |
aacatgtgacgtcgcttttgaatgttgggtctgatgatactgcccaaagggtagggctccatgggattggtggaatagggaaaactactcttgctctaga |
117 |
Q |
| |
|
|||| ||||| || |||||||||||||| ||||||||| | ||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29803467 |
aacacgtgacttcacttttgaatgttggatctgatgatgcaatccatatggtagggatccatgggattggtggaatagggaaaactactcttgctctaga |
29803368 |
T |
|
| Q |
118 |
agtttataattcagttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctgagaaaaatgggttgatatatctccaaaagatc |
217 |
Q |
| |
|
||||||||| || ||||||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
29803367 |
agtttataactctattgtctgtcaatttcaaggttcctgttttcttgaaaaagtaagagaaaattcagacaaaaatgggttgatatatctccaaaagatc |
29803268 |
T |
|
| Q |
218 |
cttctgtctcaaattcttggagagaaggacatggagttaacaagtgttggacaaggaatttcaatattacaacaaaggctccgccaaaagaaggttcttt |
317 |
Q |
| |
|
||| ||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| || |||| ||||||||||| |||||||||| |||||| |
|
|
| T |
29803267 |
cttttgtctcaaatttttggagagaagaacattgagttaacaagtgttggacaaggaatttccatgttacgacaaaggctccaccaaaagaagattcttt |
29803168 |
T |
|
| Q |
318 |
tgcttctagacgatgttgac |
337 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
29803167 |
tgcttctagatgatgttgac |
29803148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 32 - 337
Target Start/End: Original strand, 29468814 - 29469119
Alignment:
| Q |
32 |
cttttgaatgttgggtctgatgatactgcccaaagggtagggctccatgggattggtggaatagggaaaactactcttgctctagaagtttataattcag |
131 |
Q |
| |
|
|||||||||| |||| || |||||| | ||||| ||||||| ||||||||||||||||||||||||||||||| ||||| || | |||||||||||| |
|
|
| T |
29468814 |
cttttgaatgatgggcctaatgataaagtccaaatggtagggatccatgggattggtggaatagggaaaactacccttgccctggcagtttataattcca |
29468913 |
T |
|
| Q |
132 |
ttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctgagaaaaatgggttgatatatctccaaaagatccttctgtctcaaat |
231 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||||| | |
|
|
| T |
29468914 |
ttgtccatcaatttcaaggttcctgttttcttgaaaaagttagagaaaattcagacaaaaatgggttgatacatctccaaaagatccttctatctcaagt |
29469013 |
T |
|
| Q |
232 |
tcttggagagaaggacatggagttaacaagtgttggacaaggaatttcaatattacaacaaaggctccgccaaaagaaggttcttttgcttctagacgat |
331 |
Q |
| |
|
| ||||||| ||| |||| ||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29469014 |
tgttggagaaaagaacattgagttaacaagtgttagacaaggaatttcaatattacaaaaaaggttccaccaaaagaaggttcttttgcttctagacgat |
29469113 |
T |
|
| Q |
332 |
gttgac |
337 |
Q |
| |
|
|||||| |
|
|
| T |
29469114 |
gttgac |
29469119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 29674614 - 29674278
Alignment:
| Q |
1 |
agtggagtagcaaagggaacatgtgacgtcgcttttgaatgttgggtctgatgatactgcccaaagggtagggctccatgggattggtggaatagggaaa |
100 |
Q |
| |
|
||||||| | |||| | |||| ||||| | ||||||||||||||||||||| ||| | ||| | ||||||| | | |||||||||||||||||||||| |
|
|
| T |
29674614 |
agtggagcaccaaaagcaacacgtgactttgcttttgaatgttgggtctgacgattcaatccacaaggtagggattcttgggattggtggaatagggaaa |
29674515 |
T |
|
| Q |
101 |
actactcttgctctagaagtttataattcagttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctgagaaaaatgggttga |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||| ||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29674514 |
accactcttgctctagaagtttataattcaattgtcagtcaatttgaatgttcctgttttcttgaaaaagttagagaaaattctgacaaaaatgggttga |
29674415 |
T |
|
| Q |
201 |
tatatctccaaaagatccttctgtctcaaattcttggagagaaggacatggagttaacaagtgttggacaaggaatttcaatattacaacaaaggctccg |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| ||||||||||| ||| ||| |||||||||||||| |||||||||||||| || || ||||||| | |
|
|
| T |
29674414 |
tatatctccaaaagatccttctatctcatatttttggagagaagaacacagagataacaagtgttggagaaggaatttcaatactaaaaaaaaggcttcc |
29674315 |
T |
|
| Q |
301 |
ccaaaagaaggttcttttgcttctagacgatgttgac |
337 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
29674314 |
agaaaagaaggttcttttgcttttagacgatgttgac |
29674278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 29695980 - 29695664
Alignment:
| Q |
18 |
aacatgtgacgtcgcttttgaatgttgggtctgatgatactgcccaaagggtagggctccatgggattggtggaatagggaaaactactcttgctctaga |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||| ||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29695980 |
aacatgtgacttcgcttttgaatgttgggtctaatgatacaatccacatggtggggatccatgggattggtggaatagggaaaactactcttgctctaga |
29695881 |
T |
|
| Q |
118 |
agtttataattcagttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctgagaaaaatgggttgatatatctccaaaagatc |
217 |
Q |
| |
|
|||||||||||| ||||| || ||||||| ||||||||||| |||||||||| ||||| | | || ||| ||||||||||||||||||||||||| |
|
|
| T |
29695880 |
agtttataattcgattgtccatcaatttcaatgttcctgtttttttgaaaaagtcagagac---tttaaggaaagtgggttgatatatctccaaaagatc |
29695784 |
T |
|
| Q |
218 |
cttctgtctcaaattcttggagagaaggacatggagttaacaagtgttggacaaggaatttcaatattacaacaaaggctccgccaaaagaaggttcttt |
317 |
Q |
| |
|
||||||||||||||| ||||||||| | |||||||| |||| |||||| |||||||| |||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
29695783 |
cttctgtctcaaattgttggagagacgaacatggagataaccagtgttagacaaggagtttcaatattacaacaaaggcttcaccaaaagaaggttcttt |
29695684 |
T |
|
| Q |
318 |
tgcttctagacgatgttgac |
337 |
Q |
| |
|
| ||||| || ||||||||| |
|
|
| T |
29695683 |
tacttctggatgatgttgac |
29695664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 28479963 - 28479647
Alignment:
| Q |
18 |
aacatgtgacgtcgcttttgaatgttgggtctgatgatactgcccaaagggtagggctccatgggattggtggaatagggaaaactactcttgctctaga |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||| | ||| ||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28479963 |
aacatgtgacttcgcttttgaatgttgggtctgatgatacaatccacatggtcgggatccatgggattggtggaataggaaaaactactcttgctctaga |
28479864 |
T |
|
| Q |
118 |
agtttataattcagttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctgagaaaaatgggttgatatatctccaaaagatc |
217 |
Q |
| |
|
|||||||||||| ||||| ||| |||| || ||||||||||| |||||||||| |||| | | | || ||| ||||||||||||||||||||||||| |
|
|
| T |
28479863 |
agtttataattcgattgtccgtcaatttgaatgttcctgtttttttgaaaaagtcagag---actttaaggaaagtgggttgatatatctccaaaagatc |
28479767 |
T |
|
| Q |
218 |
cttctgtctcaaattcttggagagaaggacatggagttaacaagtgttggacaaggaatttcaatattacaacaaaggctccgccaaaagaaggttcttt |
317 |
Q |
| |
|
||||||||||||||| ||||||||| | |||||| ||||||||||| |||| ||| |||| ||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
28479766 |
cttctgtctcaaattgttggagagacaaaaatggagataacaagtgttagacagggagtttcgatattacaacaaaggcttcaccaaaagaaggttcttt |
28479667 |
T |
|
| Q |
318 |
tgcttctagacgatgttgac |
337 |
Q |
| |
|
| ||||| || ||||||||| |
|
|
| T |
28479666 |
tacttctggatgatgttgac |
28479647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 29792418 - 29792102
Alignment:
| Q |
18 |
aacatgtgacgtcgcttttgaatgttgggtctgatgatactgcccaaagggtagggctccatgggattggtggaatagggaaaactactcttgctctaga |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||| | ||| ||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29792418 |
aacatgtgacttcgcttttgaatgttgggtctgatgatacaatccacatggtcgggatccatgggattggtggaataggaaaaactactcttgctctaga |
29792319 |
T |
|
| Q |
118 |
agtttataattcagttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctgagaaaaatgggttgatatatctccaaaagatc |
217 |
Q |
| |
|
|||||||||||| ||||| ||| |||| || ||||||||||| |||||||||| |||| | | | || ||| ||||||||||||||||||||||||| |
|
|
| T |
29792318 |
agtttataattcgattgtccgtcaatttgaatgttcctgtttttttgaaaaagtcagag---actttaaggaaagtgggttgatatatctccaaaagatc |
29792222 |
T |
|
| Q |
218 |
cttctgtctcaaattcttggagagaaggacatggagttaacaagtgttggacaaggaatttcaatattacaacaaaggctccgccaaaagaaggttcttt |
317 |
Q |
| |
|
||||||||||||||| ||||||||| | |||||| ||||||||||| |||| ||| |||| ||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
29792221 |
cttctgtctcaaattgttggagagacaaaaatggagataacaagtgttagacagggagtttcgatattacaacaaaggcttcaccaaaagaaggttcttt |
29792122 |
T |
|
| Q |
318 |
tgcttctagacgatgttgac |
337 |
Q |
| |
|
| ||||| || ||||||||| |
|
|
| T |
29792121 |
tacttctggatgatgttgac |
29792102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 29759962 - 29759649
Alignment:
| Q |
18 |
aacatgtgacgtcgcttttgaatgttgggtctgatgatactgcccaaagggtagggctccatgggattggtggaatagggaaaactactcttgctctaga |
117 |
Q |
| |
|
||||| |||| || ||||||||| ||||||| |||||||| | ||| | ||||||| |||||||||| |||||||| |||||||| |||||||||||| |
|
|
| T |
29759962 |
aacatctgacttcccttttgaatattgggtcagatgatacagtccacatggtagggatccatgggatgggtggaattgggaaaacaactcttgctctatc |
29759863 |
T |
|
| Q |
118 |
agtttataattcagttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctgagaaaaatgggttgatatatctccaaaagatc |
217 |
Q |
| |
|
|||||||||| ||| | | |||| | | ||| |||||||||||||| ||||| |||||| ||| ||| ||||||| |||||||||||| ||| |
|
|
| T |
29759862 |
tgtttataatttgattgcccatgaatttgatgcttcatgttttcttgaaaatgttagggaaaatcatgaaaaacatgggttaccatatctccaaaacatc |
29759763 |
T |
|
| Q |
218 |
cttctgtctcaaattcttggagagaaggacatggagttaacaagtgttggacaaggaatttcaatattacaacaaaggctccgccaaaagaaggttcttt |
317 |
Q |
| |
|
|||| || || | |||| ||||| | || | ||||| ||||| ||||||||||||||||||| | || |||||||| ||||||||| | |||| |
|
|
| T |
29759762 |
attctttccaaagtagttggggagaa--aaat-gccttaaccggtgttcgacaaggaatttcaatattggagcagaggctccgacaaaagaagttacttt |
29759666 |
T |
|
| Q |
318 |
tgcttctagacgatgtt |
334 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
29759665 |
tgattctagacgatgtt |
29759649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 240
Target Start/End: Original strand, 28901296 - 28901505
Alignment:
| Q |
31 |
gcttttgaatgttgggtctgatgatactgcccaaagggtagggctccatgggattggtggaatagggaaaactactcttgctctagaagtttataattca |
130 |
Q |
| |
|
|||||||||||||||||||| ||||| | | | | ||| || |||| || | |||||||||||||||||| |||||| |||| | ||||||||||||| |
|
|
| T |
28901296 |
gcttttgaatgttgggtctgttgataaagtctatatggtcggaatccacggaactggtggaatagggaaaacaactctttctcttgcagtttataattca |
28901395 |
T |
|
| Q |
131 |
gttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctgagaaaaatgggttgatatatctccaaaagatccttctgtctcaaa |
230 |
Q |
| |
|
||||| || |||| | ||||| |||| ||||||| | || |||| |||| |||||| ||||||||||| |||||||||| |||||||| ||| ||| |
|
|
| T |
28901396 |
attgtcgatcaatttgatggttcttgttatcttgaagatgtaagaggaaataaagagaaacatgggttgatacatctccaaaatatccttctttctaaaa |
28901495 |
T |
|
| Q |
231 |
ttcttggaga |
240 |
Q |
| |
|
| ||||||| |
|
|
| T |
28901496 |
tatttggaga |
28901505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 29724858 - 29724756
Alignment:
| Q |
3 |
tggagtagcaaagggaacatgtgacgtcgcttttgaatgttgggtctgatgatactgcccaaagggtagggctccatgggattggtggaatagggaaaac |
102 |
Q |
| |
|
||||| |||||| | ||||||| || | ||||||||| |||||||||||||||| || | ||||||| |||||||||||||||||||||||||| | |
|
|
| T |
29724858 |
tggagcagcaaaagcaacatgtaactttccttttgaatcttgggtctgatgatac----cacatggtagggatccatgggattggtggaatagggaaagc |
29724763 |
T |
|
| Q |
103 |
tactctt |
109 |
Q |
| |
|
|||||| |
|
|
| T |
29724762 |
aactctt |
29724756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 29728466 - 29728372
Alignment:
| Q |
18 |
aacatgtgacgtcgcttttgaatgttgggtctgatgatactgcccaaagggtagggctccatgggattggtggaatagggaaaactactcttgct |
112 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||||||| || | ||||||| || | ||||||||||||||||||||||| ||||||||| |
|
|
| T |
29728466 |
aacatgtgatttcccttttgaatgttgggtcggatgataaagcatgtatggtagggatctacgggattggtggaatagggaaaacaactcttgct |
29728372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 334
Target Start/End: Complemental strand, 29724647 - 29724563
Alignment:
| Q |
250 |
ggagttaacaagtgttggacaaggaatttcaatattacaacaaaggctccgccaaaagaaggttcttttgcttctagacgatgtt |
334 |
Q |
| |
|
|||||||||| |||||| |||||||||||| ||||| | |||||| ||| | ||||||| | |||||| |||||||||||||| |
|
|
| T |
29724647 |
ggagttaacaggtgttgtacaaggaatttctatattggagcaaagggtccagccaaagaagttgcttttgattctagacgatgtt |
29724563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 29477506 - 29477457
Alignment:
| Q |
78 |
atgggattggtggaatagggaaaactactcttgctctagaagtttataat |
127 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||||| || |||||||||| |
|
|
| T |
29477506 |
atgggattggcggaatagggaaaacaacacttgctcgagcagtttataat |
29477457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 614381 - 614700
Alignment:
| Q |
18 |
aacatgtgacgtcgcttttgaatgttgggtctgatgatactgcccaaagggtagggctccatgggattggtggaatagggaaaactactcttgctctaga |
117 |
Q |
| |
|
|||| ||||| || ||||||||| |||||||||||||||| ||| | ||| ||| ||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
614381 |
aacacgtgacttcacttttgaatattgggtctgatgatacgatccacatggtggggatccttgggattggtggaatagggaaaactactcttgctctgga |
614480 |
T |
|
| Q |
118 |
agtttataattcagttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctgagaaaaatgggttgatatatctccaaaagatc |
217 |
Q |
| |
|
|||||||||||| |||| || ||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
614481 |
agtttataattcgattgttcatcaatttcaatgttcctgttttgttgaaaaagtcagagaaaattctgacaaaaatgggttgatacatctccaaaagatc |
614580 |
T |
|
| Q |
218 |
cttctgtctcaaattcttggagagaaggacatggagttaacaagtgttggacaaggaatttcaatattacaacaaaggctccgccaaaagaaggttcttt |
317 |
Q |
| |
|
||| ||||||||||| ||||||||||| ||| ||| |||||||||||||||||||||||| |||||||||| ||||||| | |||||||||||||||| |
|
|
| T |
614581 |
cttttgtctcaaattgttggagagaagaacacagagataacaagtgttggacaaggaattttaatattacaaaaaaggcttcaacaaaagaaggttcttt |
614680 |
T |
|
| Q |
318 |
tgcttctagacgatgttgac |
337 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
614681 |
tgcttctagacgatgttgac |
614700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 88 - 333
Target Start/End: Complemental strand, 5922900 - 5922655
Alignment:
| Q |
88 |
tggaatagggaaaactactcttgctctagaagtttataattcagttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctgag |
187 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||| ||||||| ||||| || |||| || |||| || ||||||||||| || |||||||| ||| |
|
|
| T |
5922900 |
tggaattggtaaaacaactcttgctctagaagtctataatttgattgtccatcaatttgaaagttcatgctttcttgaaaacattcaggaaaattcagag |
5922801 |
T |
|
| Q |
188 |
aaaaatgggttgatatatctccaaaagatccttctgtctcaaattcttggagagaaggacatggagttaacaagtgttggacaaggaatttcaatattac |
287 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||| | |||| ||||||||||||| || ||||||||||||||| ||||||||||||| || ||| |
|
|
| T |
5922800 |
aaacatgggttgatatatctccaaaagatcattcttttggaaataattggagagaaggagattgagttaacaagtgttaaacaaggaatttcagtaatac |
5922701 |
T |
|
| Q |
288 |
aacaaaggctccgccaaaagaaggttcttttgcttctagacgatgt |
333 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
5922700 |
aacaaaggctccggaaaaagaaggttcttttgcttctagatgatgt |
5922655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 239332 - 239137
Alignment:
| Q |
18 |
aacatgtgacgtcgcttttgaatgttgggtctgatgatactgcccaaagggtagggctccatgggattggtggaatagggaaaactactcttgctctaga |
117 |
Q |
| |
|
|||||||||| || |||||||||||| |||||||| |||| | ||| | ||||||| |||||||||||||||||||||| ||||| ||||||||| ||| |
|
|
| T |
239332 |
aacatgtgacttctcttttgaatgttaggtctgatcatacagtccacatggtagggatccatgggattggtggaataggaaaaacaactcttgctttagc |
239233 |
T |
|
| Q |
118 |
agtttataattcagttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctgagaaaaatgggttgatatatctccaaaa |
213 |
Q |
| |
|
|||||||||| || | || ||| ||| ||| |||||| ||||||| || |||||||||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
239232 |
cgtttataatttgatttcccatcagtttgaagtttcatgttttattgaaaatgtgagagaaaattctaagaaacatgggttgacatatctccaaaa |
239137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 212640 - 212436
Alignment:
| Q |
18 |
aacatgtgacgtcgcttttgaatgttgggtctgatgatactgcccaaagggtagggctccatgggattggtggaatagggaaaactactcttgctctaga |
117 |
Q |
| |
|
|||||||||| || ||||||||| ||||||| |||||||| | ||| | ||||| |||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
212640 |
aacatgtgacttcccttttgaattttgggtcagatgatacggtccacatggtagcaatccatgggattggtggaatagggaaaacaactcttgctatatc |
212541 |
T |
|
| Q |
118 |
agtttataattcagttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctgagaaaaatgggttgatatatctccaaaagatc |
217 |
Q |
| |
|
|| ||||||| ||| | || |||| | | ||| |||||||||||||| |||||||||||| ||| ||| ||||||| |||||||||||| ||| |
|
|
| T |
212540 |
tgtgtataatttgattgcccatcaatttgatgtttcatgttttcttgaaaatgttagagaaaatcatgaaaaacatgggttaccatatctccaaaaaatc |
212441 |
T |
|
| Q |
218 |
cttct |
222 |
Q |
| |
|
|||| |
|
|
| T |
212440 |
attct |
212436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0573 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0573
Description:
Target: scaffold0573; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 240
Target Start/End: Complemental strand, 8498 - 8289
Alignment:
| Q |
31 |
gcttttgaatgttgggtctgatgatactgcccaaagggtagggctccatgggattggtggaatagggaaaactactcttgctctagaagtttataattca |
130 |
Q |
| |
|
|||||||||||||||||||| ||||| | | | | ||| || |||| || | |||||||||||||||||| |||||| |||| | ||||||||||||| |
|
|
| T |
8498 |
gcttttgaatgttgggtctgttgataaagtctatatggtcggaatccacggaactggtggaatagggaaaacaactctttctcttgcagtttataattca |
8399 |
T |
|
| Q |
131 |
gttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctgagaaaaatgggttgatatatctccaaaagatccttctgtctcaaa |
230 |
Q |
| |
|
||||| || |||| | ||||| |||| ||||||| | || |||| |||| |||||| ||||||||||| |||||||||| |||||||| ||| ||| |
|
|
| T |
8398 |
attgtcgatcaatttgatggttcttgttatcttgaagatgtaagaggaaataaagagaaacatgggttgatacatctccaaaatatccttctttctaaaa |
8299 |
T |
|
| Q |
231 |
ttcttggaga |
240 |
Q |
| |
|
| ||||||| |
|
|
| T |
8298 |
tatttggaga |
8289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 67048 - 67213
Alignment:
| Q |
75 |
tccatgggattggtggaatagggaaaactactcttgctctagaagtttataattcagttgtctgtctatttcaaggttcctgttttcttgaaaaagttag |
174 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||||| || |||||||||||| |||| || |||| | ||||| |||| ||||||| | || || |
|
|
| T |
67048 |
tccatggaatcggtggaatagggaaaacaactcttgctcaagcggtttataattcaattgtagatcaatttgatggttcgtgttatcttgaagatgtaag |
67147 |
T |
|
| Q |
175 |
agaaaattctgagaaaaatgggttgatatatctccaaaagatccttctgtctcaaattcttggaga |
240 |
Q |
| |
|
|| |||| ||||| | ||||||||| |||| ||||| |||||||| ||| |||| ||||||| |
|
|
| T |
67148 |
aggaaataaagagaatcaggggttgatacatcttcaaaatatccttctttctaaaatatttggaga |
67213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 31712 - 31866
Alignment:
| Q |
86 |
ggtggaatagggaaaactactcttgctctagaagtttataattcagttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctg |
185 |
Q |
| |
|
||||||||||||||||| |||||||||| || |||||||||||| |||| || |||| | ||||| |||| ||||||| | || |||| ||| | | |
|
|
| T |
31712 |
ggtggaatagggaaaacaactcttgctcaagcggtttataattcaattgtagatcaatttgatggttcgtgttatcttgaagatgtaagaggaaaaacag |
31811 |
T |
|
| Q |
186 |
agaaaaatgggttgatatatctccaaaagatccttctgtctcaaattcttggaga |
240 |
Q |
| |
|
||| | ||||||||| |||| ||||| |||||||| ||| |||| ||||||| |
|
|
| T |
31812 |
ggaatgaggggttgatacatcttcaaaatatccttctttctaaaatatttggaga |
31866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 36461 - 36615
Alignment:
| Q |
86 |
ggtggaatagggaaaactactcttgctctagaagtttataattcagttgtctgtctatttcaaggttcctgttttcttgaaaaagttagagaaaattctg |
185 |
Q |
| |
|
||||||||||||||||| |||||||||| || |||||||||||| |||| || |||| | ||||| |||| ||||||| | || |||| ||| | | |
|
|
| T |
36461 |
ggtggaatagggaaaacaactcttgctcaagcggtttataattcaattgtagatcaatttgatggttcgtgttatcttgaagatgtaagaggaaaaacag |
36560 |
T |
|
| Q |
186 |
agaaaaatgggttgatatatctccaaaagatccttctgtctcaaattcttggaga |
240 |
Q |
| |
|
||| | ||||||||| |||| ||||| |||||||| ||| |||| ||||||| |
|
|
| T |
36561 |
ggaatgaggggttgatacatcttcaaaatatccttctttctaaaatatttggaga |
36615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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