View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_135 (Length: 350)
Name: NF20384_low_135
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_135 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 8e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 3 - 203
Target Start/End: Original strand, 4917918 - 4918120
Alignment:
| Q |
3 |
cggtatgagagagttgataacatttctctcttnnnnnnnn-caaatatttaatatctaaaattgattatttgcaagacaattcaaccccatctaataaaa |
101 |
Q |
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| T |
4917918 |
cggtacgagagagttgataacatttctctcttactaaaaaacaaatatttaatatctaaagttgattatttgcaagacaattcaaccccatctaataaaa |
4918017 |
T |
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| Q |
102 |
taaaacaaaaatctgctgaggtcttaaaggtcagtctcataatgagccaaaatttcgaagttgtggtgtggaaatacctta-gttgtcggttgagagtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4918018 |
taaaacaaaaatctgctgaggtcttaaaggtcagactcataatgagccaaaatttcgaagttgtggtgtggaaataccttaggttgtcggttgagagtta |
4918117 |
T |
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| Q |
201 |
ata |
203 |
Q |
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||| |
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| T |
4918118 |
ata |
4918120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 237 - 332
Target Start/End: Original strand, 4918182 - 4918277
Alignment:
| Q |
237 |
attaaagttcaatatggtgaatgacaatgcaaaataaataaatatgaaatgaaacttttattcttctatatgaaaaatgatacttcatgagcttat |
332 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4918182 |
attaaagttcaatatggtgaataacaatgcaaaataaataaatatgaaatgaaacttttattcttctatatgaaaaatgatacttcatgagcttat |
4918277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 4912655 - 4912730
Alignment:
| Q |
240 |
aaagttcaatatggtgaatgacaatgcaaaataaataaatatgaaatgaaacttttattcttctatatgaaaaatg |
315 |
Q |
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|||| |||||||||| ||||||| | |||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
4912655 |
aaaggtcaatatggtaaatgacattttaaaataaataaatacaaaatgaaactttcattcttctatatgaaaaatg |
4912730 |
T |
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