View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_137 (Length: 349)
Name: NF20384_low_137
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_137 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 39335525 - 39335838
Alignment:
| Q |
19 |
gatccttggtgatggtgttgaataaattacgagtagggtacttgcgtcaacgacaaccttcttctgcatacaaatggggtggtgtacttgcacatacaac |
118 |
Q |
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| T |
39335525 |
gatccttggtgatggtgttgaataaattacgagtagggtacttgcgtcaactacaaccttcttctgcagacaaatggggtggtgtacttgtacatacaac |
39335624 |
T |
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| Q |
119 |
gtcgatcaagtctgtgtataatatagggtaaaaactagcgtaccttattcaatgtccataacttagtattaatagtgtatgttctaaaatgttagtgctt |
218 |
Q |
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| T |
39335625 |
gtcgatcaagtctgtgtataatatagggtaaaaactaacgtacctgattcaatgtctataacttagtattaatagtgtatgttctaaaatgttagtgctt |
39335724 |
T |
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| Q |
219 |
aaacctttatctcaacaactatagtcctcaagggacacaaactgtgaacatattacgaggagatggcctctgatcaagactagaggttttatattccttc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
39335725 |
aaacctttatctcaacaactatagtcctcaagggacacaaactgtgaacatattacgaggagatggcctctaatcaagactagaggttttatactccttg |
39335824 |
T |
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| Q |
319 |
catgagtcattatt |
332 |
Q |
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|||||||||||||| |
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| T |
39335825 |
catgagtcattatt |
39335838 |
T |
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