View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_139 (Length: 346)
Name: NF20384_low_139
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_139 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 327
Target Start/End: Complemental strand, 47003583 - 47003239
Alignment:
| Q |
7 |
agtagcaaagggcttgaaaagaccatataatatgttacaattttacacattgaagccaacctaaacattatttctttagtatcatcaccaagagtactaa |
106 |
Q |
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| T |
47003583 |
agtaacaaagggcttgaaaagaccatataatatgttacaattttacacattgaagccaacctaaacattatttctttagtatcatcaccaagagtactaa |
47003484 |
T |
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| Q |
107 |
atcaaactcaacccattctttggatgcatacacatagcttcctacctagaaatcaagaaaagtggcca---------------------taattcccaat |
185 |
Q |
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| T |
47003483 |
atcaaactcaacccattctttggatgcatacacatagcttcctacctagaattcaagaaaagtggccataacaataatgatgataggactaattcccaat |
47003384 |
T |
|
| Q |
186 |
cctaagatacttttagcacttctcctcaac---tgaggatccattgatttgcatagatggcttaggtttcttaggcttataccaaaatgcacacaccaaa |
282 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47003383 |
cctaagatacttttagcacttctcctcaactgatgaggatccattgatttgcatagatggtttaggtttcttaggcttataccaaaatgcacacaccaaa |
47003284 |
T |
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| Q |
283 |
aatgctacaaagttgatgaaactaagtatggtaagaagtgcatag |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47003283 |
aatgctacaaagttgatgaaactaagtatggtaagaagtgcatag |
47003239 |
T |
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