View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_141 (Length: 345)
Name: NF20384_low_141
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_141 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 42143760 - 42144075
Alignment:
| Q |
15 |
acttaatgaatttggtaatcttaagaatttgacacttatggacttaaggaataatagattatgttgtggattggtttcatctttacaagagatgaattca |
114 |
Q |
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| T |
42143760 |
acttaatgaatttggtaatcttaagaatttgacactaatggacttaaggaacaatagattatgttgtggattggttttatctttacaagagatgaattca |
42143859 |
T |
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| Q |
115 |
ttggaagaaatggttttatcaaataatccattaggtggtgatataaggagcttaaagtgggataattttcaaaacttggtgatattggaactctctaaca |
214 |
Q |
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| T |
42143860 |
ttggaagaaatggttttatcaaataacccattaggtggtgatataagaaccttaaagtgggagaatcttcaaaatttggtgatattggaactctctaaca |
42143959 |
T |
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| Q |
215 |
tggaattgataggtgaaattcctgagtctttatcacaattaaagaaattgagatttttgggacttagtgataacaacattacaggtaacttatcaccaaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42143960 |
tggaattgataggtgaaattcctgagtctttatcacaattaaagaaattgagatttttgggacttagtgataacaacattacaggtaacttatcaccaaa |
42144059 |
T |
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| Q |
315 |
gctagaaacacttcct |
330 |
Q |
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|||||||||||||||| |
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| T |
42144060 |
gctagaaacacttcct |
42144075 |
T |
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