View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_142 (Length: 344)
Name: NF20384_low_142
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_142 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 31606088 - 31605770
Alignment:
| Q |
16 |
acaaacaacatccatgcatagaaattcattctcccaagcaaagaccctccaagcaacacaagagtaattgcagcaaaagcaaattgatagaaaacaaaat |
115 |
Q |
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| T |
31606088 |
acaaacaacatccatgcatagaaattcattctcccaagcaaagaccctccaagcaaaacaagagtaattgcagcaaaagcaaattgatagaaaacaaaat |
31605989 |
T |
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| Q |
116 |
cagccattggtaaataataatttgttgatgccttagaaagtagaaacttctgactcaaggcaaagtttggctttccaacaaaaggtaaaagcttggtacc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31605988 |
cagccattggtaaataataatttgttgatgccttagaaagtagaaacttctgactcaaggcaaagtttggctttccaacaaaaggtaaaagcttggtacc |
31605889 |
T |
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| Q |
216 |
aaatgacatatgatgggcccataaaacccaacaaactagtacagcagcaaatgcatatagggccatgaaagccgaatttacggcccattttttcttaacc |
315 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31605888 |
aaatgccatatgatgggcccataaaacccaacaaactagtacagcagcaaatgcatatagggccatgaaagccgaatttacggcccattttttcttaacc |
31605789 |
T |
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| Q |
316 |
atgctgccatagagtatta |
334 |
Q |
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||||||||||||||||||| |
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| T |
31605788 |
atgctgccatagagtatta |
31605770 |
T |
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