View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_145 (Length: 342)
Name: NF20384_low_145
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_145 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 36047263 - 36047447
Alignment:
| Q |
19 |
tcaagatcagaagcttcaaaagccgtaagctttaattcatcagccgcgttgagaaaattgcgcacattttcaaaatactgataggcaggtaaaggctgag |
118 |
Q |
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| T |
36047263 |
tcaagatcagaagcttcaaaagccgtaagctttaattcatcagccgcgttgagaaaattgcgcacattttcaaaatactgataggcaggtaaaggctgag |
36047362 |
T |
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| Q |
119 |
aatcccaagcaagtgattgttgtaatggcacttgagtatcaacaacctaacaaaattaacatcacataaaggtaagcatttatga |
203 |
Q |
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| T |
36047363 |
aatcccaagcaagtgattgttgtaatggcacttgagtatcaacaacctaacaaaattaacatcacataaaggtaagcatttatga |
36047447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 36047513 - 36047574
Alignment:
| Q |
269 |
ttaaatatgcaattaatcactaatcatattccacatagaatagaattgaattacaatacctt |
330 |
Q |
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| T |
36047513 |
ttaaatatgcaattaatcactaatcatattccacatagaattgaattgaattacaatacctt |
36047574 |
T |
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