View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_147 (Length: 342)
Name: NF20384_low_147
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_147 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 30183768 - 30184090
Alignment:
| Q |
1 |
aatgtaatgtaatgaattaataatttcaaacaaaagacagttacggactgggattactttttaattaatggaaaatgtgggtcagaaaacaagtcattga |
100 |
Q |
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| T |
30183768 |
aatgtaatgtaatgaattaataatttcaaacaaaagacagttacggactgggattactttttaattaatggaaaatgtgggtcagaaaacaagtcattga |
30183867 |
T |
|
| Q |
101 |
gttcacttatctcttggttgcagttttaggtacaagagactctaccatggaaccaacttgtgctgcttgtgccatggattggagcatccaacttgagaag |
200 |
Q |
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| T |
30183868 |
gttcacttatctcttggttgcagttttaggtacaagagactctaccatggaaccaacttgtgctgcttgtgccatggaatggagcatccaacttgagaag |
30183967 |
T |
|
| Q |
201 |
ggcctccgttctggtaaaccaggtcacagccaattctttcatatttcttcgtcttttctggtttatttatcatacgttttaaccataaccatgtacacat |
300 |
Q |
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| T |
30183968 |
ggcctccgttctggtaaaccaggtcacagccaattctttcatatttcttcgtcttttctggtttatttatcatacgttttaaccataaccatgtacacat |
30184067 |
T |
|
| Q |
301 |
atggttttaggtatgtcccgtac |
323 |
Q |
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|||||||||||||||||| |||| |
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| T |
30184068 |
atggttttaggtatgtcctgtac |
30184090 |
T |
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