View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_149 (Length: 337)
Name: NF20384_low_149
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_149 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 52532880 - 52533187
Alignment:
| Q |
17 |
agaatcaaagcttttcatcaaggaattgcagcttgataccaaggtagtcataattcacaaccttggttaannnnnnnatcaaggaattgcaacttttcat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52532880 |
agaatcaaagcttttcatcaaggaattgcagcttgataccaaggtagtcataattcacaaccttggttaatttttt-atcaaggaattgcaacttttcat |
52532978 |
T |
|
| Q |
117 |
caaggaattgcagattaatttttctcgcctgcaattttataggtaaaacaaaataggaagtgaagaggatcaatggcataaagaaattagaaatgggttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52532979 |
caaggaattgcagattaatttttctcgcctgcaattttataggtgaaacaaaacaagaagtgaagaggatcaacggcataaagaaattagaaatgggttt |
52533078 |
T |
|
| Q |
217 |
gcttcgttggccatatttctagaccagattccaatattcattaattcattcattcaaacatagaacaataaattaattgtgtcgtaccagttgttatgca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||| |
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| T |
52533079 |
gcttcgttggccatatttctagaccagattccaatattcattaattcattcattcaaacatagaacaacaaactaattgtgtcgtactagttgttatgca |
52533178 |
T |
|
| Q |
317 |
attcaagaa |
325 |
Q |
| |
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||||||||| |
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| T |
52533179 |
attcaagaa |
52533187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 32396594 - 32396556
Alignment:
| Q |
36 |
aaggaattgcagcttgataccaaggtagtcataattcac |
74 |
Q |
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||||||||||||||||||||||||||| |||| |||||| |
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| T |
32396594 |
aaggaattgcagcttgataccaaggtactcatcattcac |
32396556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 43434418 - 43434111
Alignment:
| Q |
17 |
agaatcaaagcttttcatcaaggaattgcagcttgataccaaggtagtcataattcacaaccttggttaannnnnnnatcaaggaattgcaacttttcat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
43434418 |
agaatcaaagcttttcatcaaggaattgcaacttgataccaaggtagtcataattcacaaccttggttaatttttt-atcaaggaattgtaacttttcat |
43434320 |
T |
|
| Q |
117 |
caaggaattgcagattaatttttctcgcctgcaattttataggtaaaacaaaataggaagtgaagaggatcaatggcataaagaaattagaaatgggttt |
216 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43434319 |
caaggaattgcaaattaatttttctcgcctgcaattttataggtaaaacaaaacaggaagtgaagaggatcaatggcataaagaaattagaaatgggttt |
43434220 |
T |
|
| Q |
217 |
gcttcgttggccatatttctagaccagattccaatattcattaattcattcattcaaacatagaacaataaattaattgtgtcgtaccagttgttatgca |
316 |
Q |
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| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||| |
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| T |
43434219 |
gtttcgttggccatatttctagacccgattccaatattcattaattcattcattcaaacatagaacaacaaactaattgtgtcgtactagttgttatgca |
43434120 |
T |
|
| Q |
317 |
attcaagaa |
325 |
Q |
| |
|
||||||||| |
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|
| T |
43434119 |
attcaagaa |
43434111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 328
Target Start/End: Complemental strand, 10501627 - 10501338
Alignment:
| Q |
17 |
agaatcaaagcttttcatcaaggaattgcagcttgataccaaggtagtcataattcacaaccttggttaannnnnnnatcaaggaattgcaacttttcat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| || |
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| T |
10501627 |
agaatcaaagcttttcatcaaggaattgcagcttgataccaaggtagtcataattcacaaccttggtt----------------------aattttttat |
10501550 |
T |
|
| Q |
117 |
caaggaattgcagattaatttttctcgcctgcaattttataggtaaaacaaaataggaagtgaagaggatcaatggcataaagaaattagaaatgggttt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10501549 |
caaggaattgcagattaatttttctcgcctgcaattttataggtaaaacaaaacaggaagtgaagaggatcaatggcataaagaaattagaaatgagttt |
10501450 |
T |
|
| Q |
217 |
gcttcgttggccatatttctagaccagattccaatattcattaattcattcattcaaacatagaacaataaattaattgtgtcgtaccagttgttatgca |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10501449 |
gcttcgttggccatatttctagacaagattccaatattcattaattcattcattcaaacatagaacaataaactaattgtgtcgtaccagttgttatgca |
10501350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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