View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_low_150 (Length: 335)
Name: NF20384_low_150
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_150 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 6 - 306
Target Start/End: Original strand, 5490774 - 5491074
Alignment:
| Q |
6 |
gtgagaagaaatccattccatgaccctcctctatacagaatctttgctccctttgcagtaaccagttgaggaaaaccatgtgtatctattttatatgaac |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
5490774 |
gtgaaaagaaatccattccatgaccctcctctatacagaacgtttgctccctttgcagtaactagttgaggaaaaccatgtgtatctatcttatacgaac |
5490873 |
T |
|
| Q |
106 |
actcaccttcagcaggatcttgagggtctttccaagatgtgagatatctatatggaccagtaactaagttacttttcagcttcattccagcaaggaaagt |
205 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5490874 |
actcaccttcagcaggatcttgagggtttctccaagatgtgagatatctatatggaccagtaactaagttacttttcagcttcattccagcaaggaaagt |
5490973 |
T |
|
| Q |
206 |
gttaccaggataatcaaaactttcccacaataaatcctcattcttaccgctgctgtttgcatctttcaggacaagatttcccgaatcaaaaagctgaaca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| || ||||| ||| |
|
|
| T |
5490974 |
gttaccaggataatcaaaactttcccacaataaatcctcattcttaccgctgctgtttgcatctttcacaacaaggtttcctgaatccaacagctgcaca |
5491073 |
T |
|
| Q |
306 |
a |
306 |
Q |
| |
|
| |
|
|
| T |
5491074 |
a |
5491074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 305
Target Start/End: Original strand, 5485352 - 5485652
Alignment:
| Q |
5 |
agtgagaagaaatccattccatgaccctcctctatacagaatctttgctccctttgcagtaaccagttgaggaaaaccatgtgtatctattttatatgaa |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
5485352 |
agtgaaaagaaatccattccatgaccctcctctatatagaacttttgctccctttgaattaaccagttgaggaaaaccatgtatatctatcttatatgaa |
5485451 |
T |
|
| Q |
105 |
cactcaccttcagcaggatcttgagggtctttccaagatgtgagatatctatatggaccagtaactaagttacttttcagcttcattccagcaaggaaag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5485452 |
cactcaccttcagcaggatcttgagggtttttccaagatgtgagatatctatatggaccagtaactaagttacttttcagcttcattccagcaaggaaag |
5485551 |
T |
|
| Q |
205 |
tgttaccaggataatcaaaactttcccacaataaatcctcattcttaccgctgctgtttgcatctttcaggacaagatttcccgaatcaaaaagctgaac |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| ||||| ||||| ||||| || |||| ||| |
|
|
| T |
5485552 |
tgttaccaggataatcaaaactttcccacaagaaatcctcattctcatcgctgctgtttgcatctttcaaaacaaggtttcctgaatctaacagcttaac |
5485651 |
T |
|
| Q |
305 |
a |
305 |
Q |
| |
|
| |
|
|
| T |
5485652 |
a |
5485652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 319
Target Start/End: Original strand, 5503586 - 5503888
Alignment:
| Q |
5 |
agtgagaagaaatccattccatgaccctcctctatacagaatctttgctccctttgcagtaaccagttgaggaaaaccatgtgtatctattttatatgaa |
104 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5503586 |
agtgaaaagaaatccattccatgaccctcctctatacagaacctttgctccctttgcagtaaccagttgaggaaaaccatgtgtatctatcttatatgaa |
5503685 |
T |
|
| Q |
105 |
cactcaccttcagcaggatcttgagggtctttccaagatgtgagatatctatatggaccagtaactaagttacttttcagcttcattccagcaaggaaag |
204 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5503686 |
cactcaccctcagcaggatcttgagggtctttccaagatgtgagatatctatatggaccagtaactaagttacttttcagcttcattccagcaaggaaag |
5503785 |
T |
|
| Q |
205 |
tgttaccaggataatcaaaactttcccacaataaatcctcattcttaccgctgctgtttgcatctttcaggacaagatttcccgaatcaaaaagctgaac |
304 |
Q |
| |
|
||||||| ||||| |||||||||||||||| || | || | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5503786 |
tgttaccgggatagtcaaaactttcccacagaaagttctga------------gagtttgcatctttcaggacaagatttcccgaatcaaaaagctgaac |
5503873 |
T |
|
| Q |
305 |
aactgatttcactac |
319 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5503874 |
aactgatttcactac |
5503888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 5801974 - 5801675
Alignment:
| Q |
11 |
aagaaatccattccatgaccctcctctatacagaatctttgctccctttgcagtaaccagttgaggaaaaccatgtgtatctattttatatgaacactca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
5801974 |
aagaaatccattccatgaccctcctctatacagaactgttgctccctttgcagtaacaagttgaggaaaaccaggcatatctatcctatatgaacactca |
5801875 |
T |
|
| Q |
111 |
ccttcagcaggatcttgagggtctttccaagatgtgagatatctatatggaccagtaactaagttacttttcagcttcattccagcaaggaaagtgttac |
210 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5801874 |
ccttcagcaggatcttgagggcttctccaagatgtgagatatctatatggaccagtaactaagttacttttcagcttcattccaggaaggaaagtgttac |
5801775 |
T |
|
| Q |
211 |
caggataatcaaaactttcccacaataaatcctcattcttaccgctgctgtttgcatctttcaggacaagatttcccgaatcaaaaagctgaacaactga |
310 |
Q |
| |
|
||||||| ||||||||||||||||| || | || | || |||||||||||||| || |||||||||||||| ||||||||||||||||| |
|
|
| T |
5801774 |
caggatagtcaaaactttcccacaaaaagttctga---------gagccgtttgcatctttcaagatgagatttcccgaatccaaaagctgaacaactga |
5801684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 5455596 - 5455826
Alignment:
| Q |
5 |
agtgagaagaaatccattccatgaccctcctctatacagaatctttgctccctttgcagtaaccagttgaggaaaaccatgtgtatctattttatatgaa |
104 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
5455596 |
agtgaaaagaaatccattccatgaccctgctctatacagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaa |
5455695 |
T |
|
| Q |
105 |
cactcaccttcagcaggatcttgagggtctttccaagatgtgagatatctatatggaccagtaactaagttacttttcagcttcattccagcaaggaaag |
204 |
Q |
| |
|
|||||||||||||||||||| | ||||| | ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5455696 |
cactcaccttcagcaggatcatcagggtttctccaagaagtgagatatctatatggacccgtaactaagttacttttcagcttcattccagcaaggaaag |
5455795 |
T |
|
| Q |
205 |
tgttaccaggataatcaaaactttcccacaa |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
5455796 |
tgttaccaggataatcaaaactttcccacaa |
5455826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 5526432 - 5526731
Alignment:
| Q |
11 |
aagaaatccattccatgaccctcctctatacagaatctttgctccctttgcagtaaccagttgaggaaaaccatgtgtatctattttatatgaacactca |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||| | |||||||||||||||||||||| |||| || |||||||| ||||| |
|
|
| T |
5526432 |
aagaaatccattccatggtcctcctctatacagaattcttgctccctttactgtaaccagttgaggaaaaccatccatatcgatcctatatgaatactca |
5526531 |
T |
|
| Q |
111 |
ccttcagcaggatcttgagggtctttccaagatgtgagatatctatatggaccagtaactaagttacttttcagcttcattccagcaaggaaagtgttac |
210 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5526532 |
ccttcagcaggatcttgagggtttctccaagaagtgagatatctatatggaccagtaactaagttacttttcagcttcattccagcaaggaaagtgttac |
5526631 |
T |
|
| Q |
211 |
caggataatcaaaactttcccacaataaatcctcattcttaccgctgctgtttgcatctttcaggacaagatttcccgaatcaaaaagctgaacaactga |
310 |
Q |
| |
|
| ||||| |||||||||||||||| || | || | | ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5526632 |
cgggatagtcaaaactttcccacagaaagttctga---------gagttgtttgcatctctcaggacaagatttcccgaatcaaaaagctgaacaactga |
5526722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 5447034 - 5447264
Alignment:
| Q |
5 |
agtgagaagaaatccattccatgaccctcctctatacagaatctttgctccctttgcagtaaccagttgaggaaaaccatgtgtatctattttatatgaa |
104 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
5447034 |
agtgaaaagaaatccattccatgaccctgctctatacagaaatattgccccgtttgcagtaaccagttgaggaaaaccatgtgtatctatcttatacgaa |
5447133 |
T |
|
| Q |
105 |
cactcaccttcagcaggatcttgagggtctttccaagatgtgagatatctatatggaccagtaactaagttacttttcagcttcattccagcaaggaaag |
204 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5447134 |
cactcaccttcagcaggatcttgagggcttctccatgatgtgagatatctatatggaccagtaactaagttacttttcagcttcattccaggaaggaaag |
5447233 |
T |
|
| Q |
205 |
tgttaccaggataatcaaaactttcccacaa |
235 |
Q |
| |
|
||| ||||||||| ||||||||||||||||| |
|
|
| T |
5447234 |
tgtcaccaggatagtcaaaactttcccacaa |
5447264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 5853684 - 5853449
Alignment:
| Q |
5 |
agtgagaagaaatccattccatgaccctcctctatacagaa-tctttgctccctttgcagtaaccagttgaggaaaaccatgtgtatctattttatatga |
103 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
5853684 |
agtgaaaagaaatccattccatgaccctcctctatacaaaaatcttt-ctcccttttcagtaaccagttgaggaaaaccatgcatatctatcctatatga |
5853586 |
T |
|
| Q |
104 |
acactcaccttcagcaggatcttgagggtctttccaagatgtgagatatctatatggaccagtaactaagttacttttcagcttcattccagcaaggaaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
5853585 |
acactcaccttcagcaggatcttgagggcttctccaagatgtgagatatctatatggaccagtaactaaattacttttcagcttcattcccgcaaggaaa |
5853486 |
T |
|
| Q |
204 |
gtgttaccaggataatcaaaactttcccacaataaat |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5853485 |
ttgttaccaggataatcaaaactttcccacaaaaaat |
5853449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 5827643 - 5827353
Alignment:
| Q |
16 |
atccattccatgaccctcctctatacagaatctttgctccctttgcagtaaccagttgaggaaaaccatgtgtatctattttatatgaacactcaccttc |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || |||||||||| ||||| |||||||||||||||| |||||||| |||| ||| ||||||| || |
|
|
| T |
5827643 |
atccattccatgacccacctctatacagaattgtttttccctttgcaataacctgttgaggaaaaccatgagtatctatcctatacgaaaactcaccgtc |
5827544 |
T |
|
| Q |
116 |
agcaggatcttgagggtctttccaagatgtgagatatctatatggaccagtaactaagttacttttcagcttcattccagcaaggaaagtgttaccagga |
215 |
Q |
| |
|
||||||||||| || | | ||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5827543 |
agcaggatcttcagaggatctccaagaagtcagatatctatatggaccagtaactaagttacttctcagcttcattccagcaaggaaagtgtcaccagga |
5827444 |
T |
|
| Q |
216 |
taatcaaaactttcccacaataaatcctcattcttaccgctgctgtttgcatctttcaggacaagatttcccgaatcaaaaagctgaacaa |
306 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||| || ||| |||||||||||| ||||| ||||||||||| |||||||| |||| |
|
|
| T |
5827443 |
taattaaaactttcccacaaaaaatcctcattcttaaaacttctgcttgcatctttcacaacaaggtttcccgaatccaaaagctgcacaa |
5827353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 20344215 - 20344491
Alignment:
| Q |
16 |
atccattccatgaccctcctctatacagaatctttgctccctttgcagtaaccagttgaggaaaaccatgtgtatctattttatatgaacactcaccttc |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||| |||||||||| |||| |||||||||||||||| ||||| || |||| ||| |||||||| | |
|
|
| T |
20344215 |
atccattccatgaccctcctctatacataattgttgttccctttgcaataacttgttgaggaaaaccatgagtatcgatcctatacgaaaactcacctac |
20344314 |
T |
|
| Q |
116 |
agcaggatcttgagggtctttccaagatgtgagatatctatatggaccagtaactaagttacttttcagcttcattccagcaaggaaagtgttaccagga |
215 |
Q |
| |
|
||||||||||| || | | ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||| |
|
|
| T |
20344315 |
agcaggatcttcagaggttctccaagaagtgagatatctatatggaccagtcactaagttacttttcagcttcattccagcaagcaacgtgtcaccagga |
20344414 |
T |
|
| Q |
216 |
taatcaaaactttcccacaataaatcctcattcttaccgctgctgtttgcatctttcaggacaagatttcccgaatc |
292 |
Q |
| |
|
|||||||| ||||||||||| || ||||||| || || |||||| ||||||||||| | ||||| ||||| ||||| |
|
|
| T |
20344415 |
taatcaaagctttcccacaaaaactcctcatcctcactgctgctatttgcatcttttacaacaaggtttcctgaatc |
20344491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 5848318 - 5848153
Alignment:
| Q |
70 |
gttgaggaaaaccatgtgtatctattttatatgaacactcaccttcagcaggatcttgagggtctttccaagatgtgagatatctatatggaccagtaac |
169 |
Q |
| |
|
||||||||||||| || |||||||| | |||| |||| || ||||||||||||| || | | ||||||| |||||||||||||||||||||||||| |
|
|
| T |
5848318 |
gttgaggaaaaccgtgagtatctatcctcactgaaaactcgccgtcagcaggatcttcagaggatctccaagaagtgagatatctatatggaccagtaac |
5848219 |
T |
|
| Q |
170 |
taagttacttttcagcttcattccagcaaggaaagtgttaccaggataatcaaaactttcccacaa |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5848218 |
taagttacttttcagcttcattccagcaaggaaagtgttaccaggataatcaaaactttcccacaa |
5848153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 25808778 - 25808548
Alignment:
| Q |
5 |
agtgagaagaaatccattccatgaccctcctctatacagaatctttgctccctttgcagtaaccagttgaggaaaaccatgtgtatctattttatatgaa |
104 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
25808778 |
agtgaaaagaaatccattccatgaccctgctctatacagaaatattgccccgtttgcagtaaccagttgaggaaaaccatgtgtatctatcttatacgaa |
25808679 |
T |
|
| Q |
105 |
cactcaccttcagcaggatcttgagggtctttccaagatgtgagatatctatatggaccagtaactaagttacttttcagcttcattccagcaaggaaag |
204 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25808678 |
cactcaccttcagcaggatcttgagggcttctccatgatgtgagatatctatatggaccagtaactaagttacttttcagcttcattccaggaaggaaag |
25808579 |
T |
|
| Q |
205 |
tgttaccaggataatcaaaactttcccacaa |
235 |
Q |
| |
|
||| ||||||||| ||||||||||||||||| |
|
|
| T |
25808578 |
tgtcaccaggatagtcaaaactttcccacaa |
25808548 |
T |
|
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