View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_159 (Length: 324)
Name: NF20384_low_159
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_159 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 39475076 - 39475375
Alignment:
| Q |
19 |
atggtggcacggtgtagttccatcaaactcgccgttgatctaaatatacacttaaattaattaagtctcctgtcttcttcgaaagtaattttagcagtat |
118 |
Q |
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| T |
39475076 |
atggtggcacggtgtagttccatcaaactcgccgttgatctaaatatacacttaaattaattaagtctcctgtcttcttcgaaagtaattttagcagtat |
39475175 |
T |
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| Q |
119 |
ccattttattcatccttacttataaggttatgatacacatacacaagacacgacaatgacacctagacacaaataatagttaagaaaaaatctaaagtaa |
218 |
Q |
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| T |
39475176 |
ccattttattcatccttacttataaggttatgatacacatacacaagacacgacaatgacacctagacacaaataatagttaagaaaaaatctaaagtaa |
39475275 |
T |
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| Q |
219 |
tgaaataaacaatgtatataagtaatggtggtgcctgacaagaacatgcatcaaacactcctagtataatataattatattcatactaagaattatctac |
318 |
Q |
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| T |
39475276 |
tgaaataaacaatgtatataagtaatggtggtgcctgacaagaacatgcatcaaacactcctagtataatataattatattcatactaataattatctac |
39475375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 96 - 252
Target Start/End: Original strand, 39479141 - 39479298
Alignment:
| Q |
96 |
ttcgaaagtaattttagcagtatccattttattcatccttacttataaggttatgatacacatacacaagacacgacaatgacacctagacacaaataat |
195 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39479141 |
ttcgaatgtaattttagcggtatccattttattcatccttaattagaaggttatgatacacatacacaaaacacgacaatgacacctagacacaaataat |
39479240 |
T |
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| Q |
196 |
agttaagaaaaaatctaaagtaatgaaa--taaacaatgtatataagtaatggtggtgc |
252 |
Q |
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| T |
39479241 |
aatt-gtaaaaaaaataaagtaatgaaatgtaaacaatgtacataagtaatggtggtgc |
39479298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 39458931 - 39458867
Alignment:
| Q |
91 |
tcttcttcgaaagtaattttagcagtatccattttattcatccttacttataaggttatgataca |
155 |
Q |
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| T |
39458931 |
tcttcttcaaaagtgattttagttgtatccattttattcatccttaattagaaggttataataca |
39458867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 39479089 - 39479141
Alignment:
| Q |
19 |
atggtggcacggtgtagttccatcaaactcgccgttgatctaaatatacactt |
71 |
Q |
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| T |
39479089 |
atggtggcacggtgtaatttcatcaaactcgccgatgatctaattatacactt |
39479141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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