View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_16 (Length: 635)
Name: NF20384_low_16
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 556; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 16 - 624
Target Start/End: Complemental strand, 45815771 - 45815157
Alignment:
| Q |
16 |
atgaaggaaggacttgataatgtcaagagtaagattcaaactttaactgccaaggtcaaaaatcaagattctacagcagatggattcagctatctcgaag |
115 |
Q |
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| T |
45815771 |
atgaaggaaggacttgataatgtcaagagtaagattcaaactttaactgccaaggtcaaaaatcaagattctacagcagatggattcagctatctcgaag |
45815672 |
T |
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| Q |
116 |
ccaaaaatttgttacttttgaattattgccaatcccttgtttattacttgctgcgaaaggctaagggatgttcaatagaagaacatcctgttgttcgaag |
215 |
Q |
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| T |
45815671 |
ccaaaaatttgttacttttgaattattgccaatcccttgtttattacttgctgcgaaaggctaagggatgttcaatagaagaacatcctgttgttcgaag |
45815572 |
T |
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| Q |
216 |
tattgtagagatacgattatttttagaaaaggtctgttttattctcnnnnnnnnnnnn------aaacttggtatgtttacataagacaatctgtatctg |
309 |
Q |
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| T |
45815571 |
tattgtagagatacgattatttttagaaaaggtctgttttattctcgtgtgtgtgtgtgtgtgtaaacttggtatgtttacataagacaatctgtatctg |
45815472 |
T |
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| Q |
310 |
acattctgtaaatctttacgcagattcgtccaattgacaaaaaacaacaataccaaatccaaaaactaattaaagctagtgaaagtgcaacaagtaatac |
409 |
Q |
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| T |
45815471 |
acattctgtaaatctttacgcagattcgtccaattgacaaaaaacaacaataccaaatccaaaaactaattaaagctagtgaaagtgcaacaagtaatac |
45815372 |
T |
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| Q |
410 |
cggtgagaaggagccagctgcatccaaaaagagtgaggatgtttcaaagtatcgtccaaatcctgatatgcttgttagcaaagtagaaccaactgctgag |
509 |
Q |
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| T |
45815371 |
cggtgagaaggagccagctgcatccaaaaagagtgaggatgtttcaaagtatcgtccaaatcctgatatgcttgttagcaaagtagaaccaactgctgag |
45815272 |
T |
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| Q |
510 |
gtcggtttatttaataatatcaagtgcaaatttgtggtgtggtaatatgacgcaagatatctctgttcctggcctctctaacttaattcgtttatgctat |
609 |
Q |
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| T |
45815271 |
gtcggtttatttaataatatcaagtgcaaatttgtggtgtggtaatatgacgcaagatatctctgttcctggcctctctaacttaattcgtttatgctat |
45815172 |
T |
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| Q |
610 |
aggatgatggtgatg |
624 |
Q |
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| T |
45815171 |
aggatgatggtgatg |
45815157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 45800283 - 45800196
Alignment:
| Q |
147 |
atcccttgtttattacttgctgcgaaaggctaagggatgttcaatagaagaacatcctgttgttcgaagtattgtagagatacgattat |
235 |
Q |
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| T |
45800283 |
atcccttttttattattttctgcgaaaggc-aagcgatatttaatagaagaacattctattgtttgaagtattgtagagatatgattat |
45800196 |
T |
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