View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_160 (Length: 323)
Name: NF20384_low_160
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_160 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 12922139 - 12921844
Alignment:
| Q |
18 |
ataacagaattttcaatgaaaacagaatgttcattcatgcatagtctgaagaaagttccatgctttagcttcctttatgtgcttatgtgcatcttaagag |
117 |
Q |
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| T |
12922139 |
ataacagaattttcaatgataacagaattttcattcatgcatagtctgaagaaagttccatgctttagcttcctttatgtgcttatgtgcatcttgagag |
12922040 |
T |
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| Q |
118 |
gagaggatatgtgaagtatcatcattatatgcagtataactgcacaactaaacagtgaggtaattcattcagaacaatttgactggacaaagatttacgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12922039 |
gagaggatatgtgaagtatcatcattatatgcagtataactgcacaactaaacagtgaggtaattcattcagaacaatttgactggacaaagatttacgt |
12921940 |
T |
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| Q |
218 |
gcagcaagatcttattcatttaatgcnnnnnnnnnnnnggtattcagtgtatgttatgtcacttcccaaagaggcaaactctgcgcaatgtctctg |
313 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12921939 |
gcagcaagatcttattcatttaatgcttttttatttttggtattcagtgtatgttatgtcacttcccaaagaggcaaactctgcgcaatgtctctg |
12921844 |
T |
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