View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_low_161 (Length: 320)
Name: NF20384_low_161
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_161 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 33311246 - 33310955
Alignment:
| Q |
18 |
aggactccgttgtccacaccgagaggagtccagtgctgctgcttatgggtggtggaatgggatctggaaaaagctatgttcttaaagacattctaaaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33311246 |
aggactccgttgtccacaccgagaggagtccagtgctgctgcttatgggtggtggaatgggatctggaaaaagctatgttcttaaagacattctaaaaga |
33311147 |
T |
|
| Q |
118 |
gtaactatcatcttaactctactatttcaatataataccttaattattttgtaatgtaatgctttaagaatacttgttagcataatatcttatacaatac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33311146 |
gtaactatcatcttaactctactatttcaatataataccttaagtattttgtaatgtaatgcgttaagaatacttgttagcataatatcttatacaatac |
33311047 |
T |
|
| Q |
218 |
actaaggcacaagttgnnnnnnnnnnnnaacgnnnnnnnctatgaacatcttacttatcatgtgttaaattttggcgtcattcacttttctt |
309 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33311046 |
actaaggcacaagttgccccccgcccccaacgaaaaaaactatgaacatcttacttatcatgtgttaaattttggcgtcattcacttttctt |
33310955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 33303297 - 33303212
Alignment:
| Q |
41 |
aggagtccagtgctgctgcttatgggtggtggaatgggatctggaaaaagctatgttcttaaagacattctaaaagagtaactatc |
126 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||| |||||| ||||||| ||| |||||||||||||||||| ||||||||| |||| |
|
|
| T |
33303297 |
aggagtccagtgctactgttcatgggtggtggcatgggagctggaaagagcagtgttcttaaagacattcttaaagagtaagtatc |
33303212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 33251451 - 33251363
Alignment:
| Q |
38 |
gagaggagtccagtgctgctgcttatgggtggtggaatgggatctggaaaaagctatgttcttaaagacattctaaaagagtaactatc |
126 |
Q |
| |
|
||||||| |||||| || ||| | ||||||||||| |||||| ||||||| ||| |||||||||||||||||| ||||||||| |||| |
|
|
| T |
33251451 |
gagaggaatccagttctactgttcatgggtggtggcatgggagctggaaagagcactgttcttaaagacattcttaaagagtaattatc |
33251363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 33271623 - 33271535
Alignment:
| Q |
38 |
gagaggagtccagtgctgctgcttatgggtggtggaatgggatctggaaaaagctatgttcttaaagacattctaaaagagtaactatc |
126 |
Q |
| |
|
||||||| |||||| || ||| | ||||||||||| |||||| ||||||| ||| |||||||||||||||||| ||||||||| |||| |
|
|
| T |
33271623 |
gagaggaatccagttctactgttcatgggtggtggcatgggagctggaaagagcactgttcttaaagacattcttaaagagtaattatc |
33271535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University