View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_165 (Length: 316)
Name: NF20384_low_165
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_165 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 33310957 - 33310667
Alignment:
| Q |
13 |
ctttgcttctagtttcatcctttattattaaatggttttggcagatcattttggtctgaagcttcaaatgttgtggtcgttgaagctgatgcttttaagg |
112 |
Q |
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| T |
33310957 |
cttttcttcttgtttcatcctttattattaaatggttttggcagatcattttggtctgaagcttcaaatgttgtggtcgttgaagctgatgcttttaagg |
33310858 |
T |
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| Q |
113 |
agagtgatgtcatatataaagctcttaactctaggggtcaccatgacgacatgctcgaaactgctgaattggtatgcttctattttgtgtgaaactttaa |
212 |
Q |
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| T |
33310857 |
agagtgatgtgatatataaagctcttaactctaggggtcaccatgacgacatgctcgaaactgctgaattggtatgcttctattttgtgtgaaactttaa |
33310758 |
T |
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| Q |
213 |
aattaccattttcactatattcccttccctaattagtttgtcatcaaaatctaaacaggtgcatcagtcttccactgatgctgcatcatctctgct |
308 |
Q |
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| T |
33310757 |
aattaccattttcactatatt-----ccctaattagtttgtcatcaaaatctaaacaggtgcatcagtcttccactgatgctgcatcatctctgct |
33310667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 195
Target Start/End: Complemental strand, 33251033 - 33250879
Alignment:
| Q |
44 |
atggttttggcagatcattttggtctgaagc---ttcaaatgttgtggtcgttgaagctgatgcttttaaggagagtgatgtcatatataaagctcttaa |
140 |
Q |
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| T |
33251033 |
atggctttggcagatcattttggttgggagcagcttcaaaggcagtggttgttgaggcagatgcttttaaggagaatgatgttatatataaagcccttaa |
33250934 |
T |
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| Q |
141 |
ctctaggggtcaccatgacgacatgctcgaaactgctgaattggtatgcttctat |
195 |
Q |
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| T |
33250933 |
ctcaaggggtcaccatgatgacatgcttcaaactgctgaattggtaagctgctat |
33250879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 195
Target Start/End: Complemental strand, 33271205 - 33271051
Alignment:
| Q |
44 |
atggttttggcagatcattttggtctgaagc---ttcaaatgttgtggtcgttgaagctgatgcttttaaggagagtgatgtcatatataaagctcttaa |
140 |
Q |
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| T |
33271205 |
atggctttggcagatcattttggttgggagcagcttcaaaggcagtggttgttgaggcagatgcttttaaggagaatgatgttatatataaagcccttaa |
33271106 |
T |
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| Q |
141 |
ctctaggggtcaccatgacgacatgctcgaaactgctgaattggtatgcttctat |
195 |
Q |
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| T |
33271105 |
ctcaaggggtcaccatgatgacatgcttcaaactgctgaattggtaagctgctat |
33271051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 192
Target Start/End: Complemental strand, 33302939 - 33302786
Alignment:
| Q |
42 |
aaatggttttggcagatcattttggtctgaagc---ttcaaatgttgtggtcgttgaagctgatgcttttaaggagagtgatgtcatatataaagctctt |
138 |
Q |
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|||||| |||||||||||||||||||| | ||| |||||| |||||| ||||| || ||||||||||||||||||||||| ||||||||||| ||| |
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| T |
33302939 |
aaatggctttggcagatcattttggtcaggagcagattcaaaacctgtggttgttgaggcagatgcttttaaggagagtgatgttatatataaagccctt |
33302840 |
T |
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| Q |
139 |
aactctaggggtcaccatgacgacatgctcgaaactgctgaattggtatgcttc |
192 |
Q |
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| T |
33302839 |
cacaataggggtcattatgatgacatgcttctaacagctgaatatgtatgcttc |
33302786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 33302733 - 33302686
Alignment:
| Q |
256 |
tcaaaatctaaacaggtgcatcagtcttccactgatgctgcatcatct |
303 |
Q |
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| T |
33302733 |
tcaaaatctgaacaggtgcataagtcttccactgatgcggcatcatct |
33302686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 33250822 - 33250773
Alignment:
| Q |
256 |
tcaaaatctaaacaggtgcatcagtcttccactgatgctgcatcatctct |
305 |
Q |
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| T |
33250822 |
tcaaaatctgagcaggtgcatcaatcttcaactgatgctgcatcatctct |
33250773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 33270994 - 33270945
Alignment:
| Q |
256 |
tcaaaatctaaacaggtgcatcagtcttccactgatgctgcatcatctct |
305 |
Q |
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| T |
33270994 |
tcaaaatctgagcaggtgcatcaatcttcaactgatgctgcatcatctct |
33270945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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