View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_166 (Length: 315)
Name: NF20384_low_166
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_166 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 3 - 298
Target Start/End: Complemental strand, 36882065 - 36881770
Alignment:
| Q |
3 |
aatagatagacctaaaataaatcaatccaacatgtccatgaggtttaagaaaaattaaagttaagaaactaacttcaaaataagtaagcaatattttaaa |
102 |
Q |
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| T |
36882065 |
aatagataaacctaaaataagtcaatccaacatgcgcaagaggtttaagaaaaattaaagttaagaaactaacttcaaaataagtaagcaatattttaaa |
36881966 |
T |
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| Q |
103 |
aatgattatgaatatggttgtaataattgtatgtacctgaaaccattttatatcccacatcatttgtaaggcagaaccagcaatctgccaaggtttacca |
202 |
Q |
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| T |
36881965 |
aatgattgtgaatatggttgtaataattgtatgtacctgaaaccattttatatcccacatcatttgtaaggcagaaccagcaatctgccaaggtttacca |
36881866 |
T |
|
| Q |
203 |
tcacctagtgcctttgctgccaaatgcaatattgtattctcctccttatccattgcaagaattaagttattccaaagttctggttttgagtgctta |
298 |
Q |
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| T |
36881865 |
tcacctagtgcctttgctgccaaatgcaatattgtattctcctccttatccattgcaagaattaagttattccaaagttctggttttgagtgctta |
36881770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 127 - 298
Target Start/End: Complemental strand, 36893025 - 36892854
Alignment:
| Q |
127 |
aattgtatgtacctgaaaccattttatatcccacatcatttgtaaggcagaaccagcaatctgccaaggtttaccatcacctagtgcctttgctgccaaa |
226 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||| ||||| ||||||||| |
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| T |
36893025 |
aattttatgtacctgaaaccattttatatcccacatcatttgcaaggcagaaccagcaatctgccaaggtttatcaccacctaatgcctcggctgccaaa |
36892926 |
T |
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| Q |
227 |
tgcaatattgtattctcctccttatccattgcaagaattaagttattccaaagttctggttttgagtgctta |
298 |
Q |
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| T |
36892925 |
tgcaatactgtattctcatcctcatccattgcaagaatcaaattattccaaagttctggttttgaatgctta |
36892854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 281
Target Start/End: Complemental strand, 36902143 - 36901989
Alignment:
| Q |
130 |
tgtatgtacctgaaaccattttatatcccacatcatttgtaaggcagaaccagcaa---tctgccaaggtttaccatcacctagtgcctttgctgccaaa |
226 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||| |||| | ||||||| || || || |||||| |||||||||| |
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| T |
36902143 |
tgtatgtacctgaaaccatttcatatcccacatcatttgtaatgcagacctagcaatattctgtccaggtttatcaacagcttgtgcctctgctgccaaa |
36902044 |
T |
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| Q |
227 |
tgcaatattgtattctcctccttatccattgcaagaattaagttattccaaagtt |
281 |
Q |
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|||||||||||||||| || | |||| ||||||||| ||| |||||||||||| |
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| T |
36902043 |
tgcaatattgtattctgcttatcatcctttgcaagaaccaagctattccaaagtt |
36901989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 23278879 - 23278833
Alignment:
| Q |
136 |
tacctgaaaccattttatatcccacatcatttgtaaggcagaaccag |
182 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||| ||||| |
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| T |
23278879 |
tacctgaaaccattttatatgccacatcatttgcaaggcagcaccag |
23278833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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