View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_168 (Length: 312)
Name: NF20384_low_168
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_168 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 3810459 - 3810195
Alignment:
| Q |
17 |
aataagatcatcaattgacttcattgattctttctgctgtaaagactgaatggcattgaaaaagcccaagtccaagacattcaaatcgggtgaattcgga |
116 |
Q |
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| T |
3810459 |
aataagatcatcaattgacttcattgattctttctgctgtaaatactgaatggcattgaaaaagcccaagtccaagacattcaaatcgggtgaattcgga |
3810360 |
T |
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| Q |
117 |
ggttgacaaatcaatcgaatgtcaaacccatcttcacttgctgctcgacaaaaatcaggatcatctttagaaatatgagactttgcattgtcttgttgaa |
216 |
Q |
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| T |
3810359 |
ggt-------------------caaacccatcttcacttgctgctcgacaaaaatcaggatcatctttagaaatatgagactttgcattctcttgttgaa |
3810279 |
T |
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| Q |
217 |
tgaaaattgtcttccctacatcttctattggccagcaattcttaagggctggtaagattttgctcatcatgaaagttttattca |
300 |
Q |
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| T |
3810278 |
tgaaaattgtcttccctacatcttctattggccagcaattcttaagggctggtaagattttgctcatcatgaaagttttattca |
3810195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 1329651 - 1329564
Alignment:
| Q |
63 |
tgaatggcattgaaaaagcccaagtccaagacattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtcaaacccatctt |
150 |
Q |
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| T |
1329651 |
tgaatggcactgaagaagccaaggtctaagacatttagttcaggggaattgggaggttgacacatcagtcgaatgtcgaacccatctt |
1329564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 45489304 - 45489216
Alignment:
| Q |
81 |
cccaagtccaagacattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtcaaacccatcttcacttgctgctcgacaaaa |
169 |
Q |
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| T |
45489304 |
cccaaatccaaaacattcaaatcgggagagttaggtggttgacatatcaatcgaatgtcaaacccaccttcagaagctgctctacaaaa |
45489216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 42539903 - 42539990
Alignment:
| Q |
63 |
tgaatggcattgaaaaagcccaagtccaagacattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtcaaacccatctt |
150 |
Q |
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| T |
42539903 |
tgaatggcactgaagaagccaaggtctaagacatttagttcaggggaattgggaggttgacacatcagtcgaatgtcgaacccatctt |
42539990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 8187209 - 8187133
Alignment:
| Q |
93 |
acattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtcaaacccatcttcacttgctgctcgacaaaa |
169 |
Q |
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| T |
8187209 |
acattcaaatcgggagaattaggtcgttaacatatcaatcgaatgtcaaacccaccttcaaaagctgctctacaaaa |
8187133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 40286926 - 40286990
Alignment:
| Q |
75 |
aaaaagcccaagtccaagacattcaaatcgggtgaattcggaggttgacaaatcaatcgaatgtc |
139 |
Q |
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| T |
40286926 |
aaaaagcctaaatccaatacgttcaaatcgggagaattaggaggttgaaaagtcaaacgaatgtc |
40286990 |
T |
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