View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_169 (Length: 309)
Name: NF20384_low_169
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_169 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 38894564 - 38894861
Alignment:
| Q |
18 |
ctgacatgtttgctgaggttgtttgatgatg------tgattggtgttgtgagctatacaaggaaggaacactaacaagattgtttgtacttgtagtact |
111 |
Q |
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| T |
38894564 |
ctgacatgtttgctgaggttgtttgatgatgagattgtgattggtgttgtgagctatacaaggaaggaacactaacaagattgtttgtacttgtagtact |
38894663 |
T |
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| Q |
112 |
atccttattatcaatgttattattcactagtggaagtgaaatagaactagttaactcttgacattcattattagaggagaatttatttccaaacacccaa |
211 |
Q |
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| T |
38894664 |
atccttattatcaatgttattattcactagtggaagtgaaatagaactagttaactcttgacattcattattagaggagaatttatttccaaacacccaa |
38894763 |
T |
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| Q |
212 |
ttttcatgaatctcatgcaaattactattattagccaatattgtgtcatgagatgtttgagacatccaaagagataaacctgacctagatgtttgatt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38894764 |
ttttcatgaatctcatgcaaattactattattagccaatattgtgtcatgagatgtttgagacatccaaagagataaacctgacctagatgtttgatt |
38894861 |
T |
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