View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_17 (Length: 634)

Name: NF20384_low_17
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_17
NF20384_low_17
[»] chr3 (6 HSPs)
chr3 (390-625)||(40561699-40561934)
chr3 (4-214)||(40562156-40562366)
chr3 (199-382)||(40561962-40562144)
chr3 (16-72)||(29601052-29601108)
chr3 (5-102)||(48508384-48508484)
chr3 (14-58)||(52678930-52678974)
[»] chr5 (3 HSPs)
chr5 (14-65)||(988495-988546)
chr5 (5-72)||(36215637-36215704)
chr5 (18-102)||(14911334-14911421)
[»] chr4 (2 HSPs)
chr4 (23-132)||(55772156-55772265)
chr4 (17-58)||(50288023-50288064)
[»] chr8 (1 HSPs)
chr8 (18-71)||(12966381-12966434)
[»] chr7 (8 HSPs)
chr7 (5-102)||(40979961-40980061)
chr7 (14-72)||(35922411-35922469)
chr7 (5-43)||(38135308-38135346)
chr7 (17-65)||(4066925-4066973)
chr7 (14-58)||(18795845-18795889)
chr7 (5-69)||(21517449-21517513)
chr7 (14-58)||(24434443-24434487)
chr7 (5-101)||(28627967-28628066)
[»] scaffold0279 (1 HSPs)
scaffold0279 (4-42)||(17687-17725)
[»] chr1 (3 HSPs)
chr1 (5-43)||(8676960-8676998)
chr1 (5-50)||(3818944-3818989)
chr1 (11-43)||(43375693-43375725)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 390 - 625
Target Start/End: Complemental strand, 40561934 - 40561699
Alignment:
Q  390 tatacggcatgcacggggacagtaatttagtatgccccccaaataatgccatgctaccttttctgtacaagtattattgttcttaactgcatatggaaag 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40561934 tatacggcatgcacggggacagtaatttagtatgccccccaaataatgcaatgctaccttttctgtacaagtattattgttcttaactgcatatggaaag 40561835  T
Q  490 tggtccatgaaagtatgatgttttcggtatttatctggttaaaagtatatatagctgagggagtcccccacacccttttcaaatgctattctcgtatagt 589  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  40561834 tggtccatgaaagtatgatgttttcggtatttatctggttaaaagtatatatagctgagggagtcccccacacccttttcaaataccattctcgtatagt 40561735  T
Q  590 caatcaatccccaaaaacatgagtctgtctctgctc 625  Q
    ||||||||||||||||||||||||||||||||||||    
T  40561734 caatcaatccccaaaaacatgagtctgtctctgctc 40561699  T

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Target: chr3; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 4 - 214
Target Start/End: Complemental strand, 40562366 - 40562156
Alignment:
Q  4 atataagaataactattaaaaaagatttagagattaatgaattgaattcaaatataacttatgatagaaactatcgtaatttgatcgatgtagccgacct 103  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | | ||||||||||||||| ||| |||||||||||||    
T  40562366 atataagaataactattaaaaaagaattagagattaatgagttgaattcaaatataacttataacaaaaactatcgtaatttaatctatgtagccgacct 40562267  T
Q  104 acctaatatcacaaagcttggtagttgttgtttggaaattcattagaatgagtggttgaagatataagactcatttagtggttagagtgagttaaaaagt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  40562266 acctaatatcacaaagcttggtagttgttgtttggaaattcattagaatgaatggttgaagatataagactcatttggtggttagagtgagttaaaaagt 40562167  T
Q  204 ttgagagctct 214  Q
    |||||||||||    
T  40562166 ttgagagctct 40562156  T

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Target: chr3; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 199 - 382
Target Start/End: Complemental strand, 40562144 - 40561962
Alignment:
Q  199 aaagtttgagagctctattctccacaaaatactactataacatttgtctagctaaatttattttctctcatctcccttccattctttagnnnnnnncagc 298  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  40562144 aaagtttgacagctctattctccacaaaatactactataacatttgtctagctaaatttattttctctcatctcccttccattctttag-aaaaaacagc 40562046  T
Q  299 ctaaagcacaagttagcattaccttaattaaaatgatttcctctattaataattctttcatccattctccctttaacacttctg 382  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  40562045 ctaaagcacaagttagcattaccttaattaaaatgattttctctattaataattctttcatccattctcccttaaacacttctg 40561962  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 29601052 - 29601108
Alignment:
Q  16 ctattaaaaaagatttagagattaatgaattgaattcaaatataacttatgatagaa 72  Q
    ||||||| |||||||||||||||||||| ||| |||||||||||  |||||||||||    
T  29601052 ctattaagaaagatttagagattaatgagttggattcaaatatagtttatgatagaa 29601108  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 48508384 - 48508484
Alignment:
Q  5 tataagaataactattaaaaaagatttagagattaatgaattgaattcaaatataacttatgatagaa-actat--cgtaatttgatcgatgtagccgac 101  Q
    |||||||  ||| |||| ||| ||||||||| | ||||| ||| ||||||||||   ||||||||||| |||||  |||||||||||| |||||||||||    
T  48508384 tataagagaaaccattagaaaggatttagaggtcaatgagttggattcaaatatggtttatgatagaacactatggcgtaatttgatccatgtagccgac 48508483  T
Q  102 c 102  Q
    |    
T  48508484 c 48508484  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 52678974 - 52678930
Alignment:
Q  14 aactattaaaaaagatttagagattaatgaattgaattcaaatat 58  Q
    ||||||||  |||||||||||| ||||||| ||||||||||||||    
T  52678974 aactattatgaaagatttagaggttaatgagttgaattcaaatat 52678930  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 988546 - 988495
Alignment:
Q  14 aactattaaaaaagatttagagattaatgaattgaattcaaatataacttat 65  Q
    |||||||||||||||||| |||||||| |||||||||| |||||||| ||||    
T  988546 aactattaaaaaagattttgagattaacgaattgaattaaaatataatttat 988495  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 36215637 - 36215704
Alignment:
Q  5 tataagaataactattaaaaaagatttagagattaatgaattgaattcaaatataacttatgatagaa 72  Q
    |||||||  ||| |||||||||||||||||| | ||| |||||||| |||| || |||||||||||||    
T  36215637 tataagagaaaccattaaaaaagatttagaggtcaattaattgaatccaaacatgacttatgatagaa 36215704  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 14911334 - 14911421
Alignment:
Q  18 attaaaaaagatttagagattaatgaattgaattcaaatataacttatgatagaa-actat--cgtaatttgatcgatgtagccgacc 102  Q
    |||| ||||||||||||| ||||||| ||| || ||||||| | || |||||||| |||||  ||| |||||||| ||||||||||||    
T  14911334 attagaaaagatttagaggttaatgagttggatccaaatatgatttttgatagaatactatggcgtcatttgatccatgtagccgacc 14911421  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 55772156 - 55772265
Alignment:
Q  23 aaaagatttagagattaatgaattgaattcaaatataacttatgatagaaactatcgtaatttgatcgatgtagccgacct-acctaatatcacaaagct 121  Q
    |||||||||| |||||||||| ||| || |||||| || ||||||||||  | |||||| ||||||| ||||||||||||| |||||||   | ||||||    
T  55772156 aaaagatttatagattaatgagttggatccaaataaaatttatgatagat-caatcgtactttgatccatgtagccgacctcacctaatggaataaagct 55772254  T
Q  122 tggtagttgtt 132  Q
    |||| ||||||    
T  55772255 tggttgttgtt 55772265  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 50288064 - 50288023
Alignment:
Q  17 tattaaaaaagatttagagattaatgaattgaattcaaatat 58  Q
    ||||||||||||||||||| | |||||||||||| |||||||    
T  50288064 tattaaaaaagatttagaggtcaatgaattgaatgcaaatat 50288023  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 12966434 - 12966381
Alignment:
Q  18 attaaaaaagatttagagattaatgaattgaattcaaatataacttatgataga 71  Q
    ||||| |||||||||||||||||||| ||||||||||||||   ||||||||||    
T  12966434 attaagaaagatttagagattaatgagttgaattcaaatatggtttatgataga 12966381  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 40980061 - 40979961
Alignment:
Q  5 tataagaataactattaaaaaagatttagagattaatgaattgaattcaaatataacttatgatagaa-actat--cgtaatttgatcgatgtagccgac 101  Q
    |||||||  |||||||| ||||||||||||| | ||||| ||| || |||||||   ||||||||||| |||||  |||||||||||| |||||||||||    
T  40980061 tataagagaaactattagaaaagatttagaggtcaatgagttggatccaaatatggtttatgatagaacactatggcgtaatttgatccatgtagccgac 40979962  T
Q  102 c 102  Q
    |    
T  40979961 c 40979961  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 35922411 - 35922469
Alignment:
Q  14 aactattaaaaaagatttagagattaatgaattgaattcaaatataacttatgatagaa 72  Q
    ||||||||| |||||||||||| ||||||| ||||||  |||||| | |||||||||||    
T  35922411 aactattaagaaagatttagaggttaatgagttgaatctaaatatgatttatgatagaa 35922469  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 38135346 - 38135308
Alignment:
Q  5 tataagaataactattaaaaaagatttagagattaatga 43  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  38135346 tataagagaaactattaaaaaagatttagagattaatga 38135308  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 4066925 - 4066973
Alignment:
Q  17 tattaaaaaagatttagagattaatgaattgaattcaaatataacttat 65  Q
    ||||| ||||||||||||||||||||| ||||||  |||||||| ||||    
T  4066925 tattataaaagatttagagattaatgagttgaatctaaatataatttat 4066973  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 18795845 - 18795889
Alignment:
Q  14 aactattaaaaaagatttagagattaatgaattgaattcaaatat 58  Q
    |||||||  ||||||||||||| ||||||| ||||||||||||||    
T  18795845 aactattcgaaaagatttagaggttaatgagttgaattcaaatat 18795889  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 21517513 - 21517449
Alignment:
Q  5 tataagaataactattaaaaaagatttagagattaatgaattgaattcaaatataacttatgata 69  Q
    |||||||  ||||||||||||| |||||||||||||| | ||| || ||||||| | ||||||||    
T  21517513 tataagagaaactattaaaaaatatttagagattaataagttggatccaaatatgatttatgata 21517449  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 24434487 - 24434443
Alignment:
Q  14 aactattaaaaaagatttagagattaatgaattgaattcaaatat 58  Q
    |||||||| ||||||||||| ||||||||||||| | ||||||||    
T  24434487 aactattagaaaagatttagggattaatgaattggactcaaatat 24434443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 28628066 - 28627967
Alignment:
Q  5 tataagaataactattaaaaaagatttagagattaatgaattgaattcaaatataacttatgatagaa-actat--cgtaatttgatcgatgtagccgac 101  Q
    |||||||  ||||||||  |||||||||||||||||||| ||| || ||||| |   ||||||||||| | |||  |||||||||||| |||||||||||    
T  28628066 tataagagaaactattaggaaagatttagagattaatgagttggatgcaaatgtggtttatgatagaacattatggcgtaatttgatccatgtagccgac 28627967  T

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Target: scaffold0279 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 17687 - 17725
Alignment:
Q  4 atataagaataactattaaaaaagatttagagattaatg 42  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  17687 atataagagaaactattaaaaaagatttagagattaatg 17725  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 8676998 - 8676960
Alignment:
Q  5 tataagaataactattaaaaaagatttagagattaatga 43  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  8676998 tataagagaaactattaaaaaagatttagagattaatga 8676960  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 3818989 - 3818944
Alignment:
Q  5 tataagaataactattaaaaaagatttagagattaatgaattgaat 50  Q
    |||||||  ||||||||| |||||||||||||||||||| ||||||    
T  3818989 tataagagaaactattaagaaagatttagagattaatgagttgaat 3818944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 43375725 - 43375693
Alignment:
Q  11 aataactattaaaaaagatttagagattaatga 43  Q
    |||||||||||| ||||||||||||||||||||    
T  43375725 aataactattaagaaagatttagagattaatga 43375693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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