View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_171 (Length: 308)
Name: NF20384_low_171
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_171 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 290
Target Start/End: Original strand, 29320274 - 29320549
Alignment:
| Q |
15 |
caaaggatatcatttataaaacaacttaacaaatagtgcttcaaagtatacattgaaatcagcttttaaaaagagcaagcaactctttataaacaggtgt |
114 |
Q |
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| T |
29320274 |
caaaggatatcatttataaaacaacttaacaaatagtgcttcaaagtatacattgaaatcagcttttaaaaaaagcaagcaactttttataaacaggtgt |
29320373 |
T |
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| Q |
115 |
caatctgcagcattaatatgtctgtacctgtacacgggcacaagagttacatctaatgatggggactagtttctccaaaaacttcttgtgatattgagcc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
29320374 |
caatctgcagcattaatatgtctgtacctgtacacgggcacaagagttacatctaatgatgggaactagtttctccaaaaacttcttgtgatattgatcc |
29320473 |
T |
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| Q |
215 |
tgaattagtagttccttatgttcactcaaaactgaaattgttggcatagtagcccaaagtactcgagggtccaaat |
290 |
Q |
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| T |
29320474 |
tgaattagtagttccttatgttcactcaaaactgaaattgttggcatagtagcccaaagtactcgagggtccaaat |
29320549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 244
Target Start/End: Original strand, 29331345 - 29331466
Alignment:
| Q |
123 |
agcattaatatgtctgtacctgtacacgggcacaagagttacatctaatgatggggactagtttctccaaaaacttcttgtgatattgagcctgaattag |
222 |
Q |
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||||||||||||| |||||||| |||||||||||||| ||||| || |||| || |||||||||||||| ||||||||||||||||||| | |||| |
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| T |
29331345 |
agcattaatatgtttgtacctgcacacgggcacaagaattacacctgatgacaggaactagtttctccaagaacttcttgtgatattgagaacgcattaa |
29331444 |
T |
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| Q |
223 |
tagttccttatgttcactcaaa |
244 |
Q |
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| T |
29331445 |
tagttccttacattcactcaaa |
29331466 |
T |
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