View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_174 (Length: 302)
Name: NF20384_low_174
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_174 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 285
Target Start/End: Original strand, 29928641 - 29928921
Alignment:
| Q |
4 |
agcacgaatgaaactttgcaacaacaatatgttactgtaagtgatctannnnnnncaaacttttctcttaattataaacatatgtggatctaatgttgac |
103 |
Q |
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| T |
29928641 |
agcacgaatgaaactttgcaacaacaatatgttactgtaagtgatctatttttt-cataattttctcttaattataaacatatgtgtatctaatgttgac |
29928739 |
T |
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| Q |
104 |
tcaatattaaaatttaatgagtgatgtacaggttcgggatagaacaattacttctcacgtgacacaattaggagatttaaatatcagcaacgattttcta |
203 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29928740 |
tcaatattaaatttttgtgagtgatgtacaggttcgggatagaacaattacttctcacgtgacacaattaggagatttaaatatcagtaacgattttcta |
29928839 |
T |
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| Q |
204 |
gatacatatattggtgctgcccctcgtaataatgttagtgataactacaatctcactaacactacaagtgtgtattcatttg |
285 |
Q |
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| T |
29928840 |
gatacatatattggttctgcccctcttaataatgttagtgataactacaatctcactaacactacaagtgtgtattcatttg |
29928921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 28259900 - 28260017
Alignment:
| Q |
154 |
cttctcacgtgacacaattaggagatttaaatatcagcaacgattttctagatacatatattggtgctgcccctcgtaataatgttagtgataactacaa |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
28259900 |
cttctcacgtgacacaattaggagatttaaatatcagcaacgattttctagttacatatattagtgctgcccctcacaataatgttagtgataactacaa |
28259999 |
T |
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| Q |
254 |
tctcactaacactacaag |
271 |
Q |
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| T |
28260000 |
tctcagtaacactacaag |
28260017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 28259385 - 28259425
Alignment:
| Q |
11 |
atgaaactttgcaacaacaatatgttactgtaagtgatcta |
51 |
Q |
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| T |
28259385 |
atgaaactttgcaacagcaatattttaccgtaagtgatcta |
28259425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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