View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_177 (Length: 298)

Name: NF20384_low_177
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_177
NF20384_low_177
[»] chr7 (4 HSPs)
chr7 (58-282)||(5177401-5177625)
chr7 (102-278)||(8552609-8552785)
chr7 (102-278)||(8305858-8306034)
chr7 (11-63)||(5178403-5178455)
[»] chr8 (9 HSPs)
chr8 (77-280)||(5174907-5175110)
chr8 (76-283)||(5204053-5204260)
chr8 (82-281)||(5193796-5193995)
chr8 (88-282)||(6230489-6230683)
chr8 (99-268)||(1797164-1797332)
chr8 (88-283)||(5183490-5183685)
chr8 (88-281)||(5170705-5170898)
chr8 (11-54)||(5194817-5194860)
chr8 (11-54)||(5199227-5199270)
[»] chr4 (2 HSPs)
chr4 (102-267)||(49610961-49611126)
chr4 (222-270)||(10202876-10202924)
[»] chr6 (2 HSPs)
chr6 (164-274)||(1180938-1181048)
chr6 (154-276)||(1186313-1186435)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 58 - 282
Target Start/End: Complemental strand, 5177625 - 5177401
Alignment:
Q  58 tagggtctgaactaccagcaccaacaccgtaatatacagacgataatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctc 157  Q
    |||||||||||||||||  |||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5177625 tagggtctgaactaccacaaccaacactgtaatatacaaacgataatagatttggagcatcaatgttgatctccttcatgtcagaacaaaaagatatctc 5177526  T
Q  158 caacaccttaagttgaacacttgaaatattaatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaacagttca 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5177525 caacaccttaagttgaacacttgaaatattaatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaacagttca 5177426  T
Q  258 agaaaccatttgtttgtgataatac 282  Q
    |||||||||||||||| ||||||||    
T  5177425 agaaaccatttgtttgcgataatac 5177401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 102 - 278
Target Start/End: Original strand, 8552609 - 8552785
Alignment:
Q  102 aatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaacacttgaaatattaatcttctcagaca 201  Q
    ||||||||||||||||||||||||||||| ||||||| |   |||  ||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  8552609 aatagatttggagcatcaatgttgacctctttcatgttatggcaaccagataactccaacaccttaagttgaacacttgaaatattaatcgtctcagaca 8552708  T
Q  202 tagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaacagttcaagaaaccatttgtttgtgata 278  Q
    | |||||  || | |||| ||| |||||||||||||| ||||| | ||||| ||||||||||||||||| |||||||    
T  8552709 ttgtgcatttgacaaatttcaatctctcaaggaaagggaatttcgaaaacaattcaagaaaccatttgtctgtgata 8552785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 102 - 278
Target Start/End: Complemental strand, 8306034 - 8305858
Alignment:
Q  102 aatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaacacttgaaatattaatcttctcagaca 201  Q
    ||||||||||||||||||||||||||||| ||||||| |   |||  ||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  8306034 aatagatttggagcatcaatgttgacctctttcatgttatggcaatgagataactccaacaccttaagttgaacacttgaaatattaatcgtctcagaca 8305935  T
Q  202 tagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaacagttcaagaaaccatttgtttgtgata 278  Q
    | |||||  || | |||| ||| |||||||||||||  |||||   ||||| ||||||||||||||||| |||||||    
T  8305934 ttgtgcatttgacaaatttcaatctctcaaggaaagcgaatttcaaaaacaattcaagaaaccatttgtctgtgata 8305858  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 5178455 - 5178403
Alignment:
Q  11 atgaacatgggagacaatgacatacggtacctcgatgaatgctcctttagggt 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5178455 atgaacatgggagacaatgacatacggtacctcgatgaatgctcctttggggt 5178403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 77 - 280
Target Start/End: Complemental strand, 5175110 - 5174907
Alignment:
Q  77 accaacaccgtaatatacagacgataatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaaca 176  Q
    |||||||||| |||||||| || ||||||||||||| |||||||||||||||||||||| || |||||||  | ||| ||||||||||||||||||||||    
T  5175110 accaacaccgcaatatacacacaataatagatttggcgcatcaatgttgacctccttcaagttagaacaatcaaatagctccaacaccttaagttgaaca 5175011  T
Q  177 cttgaaatattaatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaacagttcaagaaaccatttgtttgtga 276  Q
    |||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||  ||||    
T  5175010 cttgaaatattaatcttctcggacatagtgcaattgtccaatttcaaactctcaaggaaaggaaatttaggaaacagttcaagaaaccatttgtcggtga 5174911  T
Q  277 taat 280  Q
    ||||    
T  5174910 taat 5174907  T

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Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 76 - 283
Target Start/End: Complemental strand, 5204260 - 5204053
Alignment:
Q  76 caccaacaccgtaatatacagacgataatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaac 175  Q
    ||||| |||| ||| ||||| ||||||||||||||||||| ||||||||||||||||||| || |||||||  ||||| |||||||||||||||||||||    
T  5204260 caccaccaccataaaatacacacgataatagatttggagcgtcaatgttgacctccttcaagttagaacaattagataactccaacaccttaagttgaac 5204161  T
Q  176 acttgaaatattaatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaacagttcaagaaaccatttgtttgtg 275  Q
    |||||||||||||||| ||||  ||||  | ||| ||| ||| | |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  5204160 acttgaaatattaatcctctcgaacatcctacaattgttcaacttcaaactctcaaggaaaggaaattttgaaaacagttcaagaaaccatttgtctgtg 5204061  T
Q  276 ataatact 283  Q
    ||||||||    
T  5204060 ataatact 5204053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 82 - 281
Target Start/End: Complemental strand, 5193995 - 5193796
Alignment:
Q  82 caccgtaatatacagacgataatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaacacttga 181  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||||||||||| || |||||||  ||||| | ||||||||||||||||| |||||||    
T  5193995 caccgtgatatacacatgataatagatttggagcatcaatgttgacctccttcaagttagaacaattagataaccccaacaccttaagttgatcacttga 5193896  T
Q  182 aatattaatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaacagttcaagaaaccatttgtttgtgataata 281  Q
    ||||| |||| |||| | ||| || ||  ||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||    
T  5193895 aatatcaatcctctcggccattgtacagttgttcaatttcaaactctcaaggaaaggaaattttggaaacagttcgagaaaccatttgtcagtgataata 5193796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 88 - 282
Target Start/End: Complemental strand, 6230683 - 6230489
Alignment:
Q  88 aatatacagacgataatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaacacttgaaatatt 187  Q
    |||||||| ||||||||||||||||||||||||| || |||||||||| || |||||||  ||||| |||||||||||||||||||||||||||||||||    
T  6230683 aatatacacacgataatagatttggagcatcaatattaacctccttcaagttagaacaatcagataactccaacaccttaagttgaacacttgaaatatt 6230584  T
Q  188 aatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaacagttcaagaaaccatttgtttgtgataatac 282  Q
    |||| |||| | ||| || |||   ||||||| |||||||||||||||| ||||||||  |||||||||||||||||||||||  ||||||||||    
T  6230583 aatcctctcggccattgtacaatcatccaatttcaaactctcaaggaaacgaaattttctaaacagttcaagaaaccatttgtcggtgataatac 6230489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 99 - 268
Target Start/End: Original strand, 1797164 - 1797332
Alignment:
Q  99 gataatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaacacttgaaatattaatcttctcag 198  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||  ||||| ||||||||||||||||||||||||||||||||||||||| || |    
T  1797164 gataatagatttggagcatcaatgttgacctccttcaagttagaacaatgagataactccaacaccttaagttgaacacttgaaatattaatcttgtcgg 1797263  T
Q  199 acatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaacagttcaagaaaccattt 268  Q
     ||| || |||    |||||| | ||||||| |||||| |||||||||||||||||||||||||||||||    
T  1797264 ccattgtacaataacccaatttc-aactctctaggaaatgaaattttggaaacagttcaagaaaccattt 1797332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 88 - 283
Target Start/End: Complemental strand, 5183685 - 5183490
Alignment:
Q  88 aatatacagacgataatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaacacttgaaatatt 187  Q
    |||||||| | ||||||||||||||||||||||| || |||||||||| || |||||||  ||||| || ||||||||||||||||||||||||||||||    
T  5183685 aatatacacatgataatagatttggagcatcaatattaacctccttcaagttagaacaattagataacttcaacaccttaagttgaacacttgaaatatt 5183586  T
Q  188 aatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaacagttcaagaaaccatttgtttgtgataatact 283  Q
    |||| |||||| |||  | |||   | |||||  |||||||||||||||||| ||| || ||||||||||||||||||||| |  |||||||||||    
T  5183585 aatcgtctcagccattttacaataatgcaattttaaactctcaaggaaaggatattctgaaaacagttcaagaaaccatttatcggtgataatact 5183490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 281
Target Start/End: Complemental strand, 5170898 - 5170705
Alignment:
Q  88 aatatacagacgataatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaacacttgaaatatt 187  Q
    |||||||| | || |||||||| ||||||||||||  ||||||||||| || | | |||   |||| |||||||||||||||||||||||||||||||||    
T  5170898 aatatacacatgacaatagattgggagcatcaatgccgacctccttcaagttatagcaatgtgataactccaacaccttaagttgaacacttgaaatatt 5170799  T
Q  188 aatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaacagttcaagaaaccatttgtttgtgataata 281  Q
    |||| | || |||||  ||||| | | ||||| ||| |||||||||||||| |||||| |||| || || ||||||||||||| ||| ||||||    
T  5170798 aatcctttcggacattttgcaattttgcaatttcaacctctcaaggaaagggaattttcgaaagagatcgagaaaccatttgtctgtaataata 5170705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 5194860 - 5194817
Alignment:
Q  11 atgaacatgggagacaatgacatacggtacctcgatgaatgctc 54  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  5194860 atgaacatgggagacaatgacatacggtacctcaatgaatgctc 5194817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 5199227 - 5199270
Alignment:
Q  11 atgaacatgggagacaatgacatacggtacctcgatgaatgctc 54  Q
    |||||||||||||||||||||||| |||||| | ||||||||||    
T  5199227 atgaacatgggagacaatgacatatggtaccacaatgaatgctc 5199270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 102 - 267
Target Start/End: Complemental strand, 49611126 - 49610961
Alignment:
Q  102 aatagatttggagcatcaatgttgacctccttcatgtcagaacaaaaagatatctccaacaccttaagttgaacacttgaaatattaatcttctcagaca 201  Q
    ||||||||||||||||||||||| |||||||||| || |   |||  ||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  49611126 aatagatttggagcatcaatgttaacctccttcaagttaaggcaatgagataactccaacaccttaagttgaacacttgaaatattaatcgtctcagaca 49611027  T
Q  202 tagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaacagttcaagaaaccatt 267  Q
    | |||||| || | |||| |||  ||||||||||||| |||||   |||||  |||||||||||||    
T  49611026 ttgtgcaattggcaaatttcaatatctcaaggaaagggaatttcaaaaacaaatcaagaaaccatt 49610961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 10202924 - 10202876
Alignment:
Q  222 aaactctcaaggaaaggaaattttggaaacagttcaagaaaccatttgt 270  Q
    ||||||||||| ||||| ||||| ||||||| |||||||||||| ||||    
T  10202924 aaactctcaagaaaagggaatttcggaaacaattcaagaaaccacttgt 10202876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 164 - 274
Target Start/End: Complemental strand, 1181048 - 1180938
Alignment:
Q  164 cttaagttgaacacttgaaatattaatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaacagttcaagaaac 263  Q
    ||||||| ||||||||||||||| |||||||| || |||  | ||| |||  |||| |||||||||||| ||||| ||||| ||||||| ||||||||||    
T  1181048 cttaagtcgaacacttgaaatatcaatcttcttaggcattttacaattgtttaatttcaaactctcaagaaaagggaatttcggaaacaattcaagaaac 1180949  T
Q  264 catttgtttgt 274  Q
    || ||||||||    
T  1180948 cacttgtttgt 1180938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 276
Target Start/End: Complemental strand, 1186435 - 1186313
Alignment:
Q  154 tctccaacaccttaagttgaacacttgaaatattaatcttctcagacatagtgcaactgtccaattccaaactctcaaggaaaggaaattttggaaacag 253  Q
    ||||||||  ||||||| ||||||||||||||| |||| ||||||  ||    ||| | || |||| |||||||||||| || || ||||| |||||||     
T  1186435 tctccaacctcttaagtcgaacacttgaaatatcaatcctctcaggaatttcacaattttctaatttcaaactctcaagaaaggggaatttcggaaacaa 1186336  T
Q  254 ttcaagaaaccatttgtttgtga 276  Q
    |||||||||||| ||||| ||||    
T  1186335 ttcaagaaaccacttgttggtga 1186313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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