View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_178 (Length: 296)
Name: NF20384_low_178
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_178 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 55053379 - 55053108
Alignment:
| Q |
17 |
catgaccaacctacctgttccttgaatgcttgaatatcatggctgaaacgacagtttacttgataaggacaggaattaacatcaccggacttggcaatgt |
116 |
Q |
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| T |
55053379 |
catgaccaacctacctgttccttgaatgcttgaatatcatggctgaaacgacagtttacttgataaggacaggaattaacatcaccggacttggcaaggt |
55053280 |
T |
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| Q |
117 |
ttggacaaaggnnnnnnnnnnnnnnnnnatcctgaagaatacagagtgaaacgtcatgttttgtggaattcatgaaaacaaacagttatgacattgttca |
216 |
Q |
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| T |
55053279 |
ttggacaaaggttttttgttgattttttatcctgaagaatacagagtgaaacgtcatgttttgtggaattcatgaaaacaaacacttatgacattgttca |
55053180 |
T |
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| Q |
217 |
taataagttgtaaaatatagcttattaaacctgaagacgttcacgtttgagttggcgtttagatttcttctc |
288 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55053179 |
aaataagttgtctaatatagcttattaaacctgaagacgttcacgtttgagttggcgtttagatttcttctc |
55053108 |
T |
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