View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_180 (Length: 293)

Name: NF20384_low_180
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_180
NF20384_low_180
[»] chr1 (8 HSPs)
chr1 (12-277)||(15244501-15244765)
chr1 (114-277)||(39440267-39440431)
chr1 (12-239)||(6242907-6243133)
chr1 (114-277)||(21502137-21502297)
chr1 (76-240)||(47899995-47900158)
chr1 (127-199)||(15878088-15878160)
chr1 (76-147)||(19709693-19709764)
chr1 (80-134)||(1972516-1972570)
[»] chr6 (1 HSPs)
chr6 (21-277)||(14274961-14275215)
[»] chr7 (10 HSPs)
chr7 (20-277)||(984466-984722)
chr7 (7-276)||(26572338-26572607)
chr7 (45-154)||(2476194-2476303)
chr7 (118-273)||(16803770-16803923)
chr7 (76-240)||(18152147-18152309)
chr7 (12-263)||(45956879-45957128)
chr7 (78-265)||(23103898-23104083)
chr7 (186-272)||(29541946-29542031)
chr7 (109-148)||(8876807-8876846)
chr7 (52-142)||(29541834-29541923)
[»] chr4 (10 HSPs)
chr4 (72-277)||(4225567-4225771)
chr4 (12-205)||(12109600-12109793)
chr4 (114-240)||(44344271-44344396)
chr4 (12-277)||(7354532-7354799)
chr4 (76-277)||(19940642-19940840)
chr4 (114-277)||(10179548-10179711)
chr4 (114-240)||(21201692-21201817)
chr4 (12-240)||(40088249-40088480)
chr4 (118-224)||(51461841-51461947)
chr4 (76-173)||(2916216-2916313)
[»] chr2 (5 HSPs)
chr2 (12-277)||(27466931-27467195)
chr2 (49-265)||(25894597-25894809)
chr2 (121-245)||(33855642-33855765)
chr2 (78-143)||(42295275-42295340)
chr2 (183-255)||(9789684-9789755)
[»] chr3 (1 HSPs)
chr3 (12-277)||(862688-862951)
[»] chr8 (4 HSPs)
chr8 (12-277)||(19452194-19452456)
chr8 (12-277)||(19528620-19528882)
chr8 (134-255)||(30117538-30117657)
chr8 (222-265)||(13217732-13217775)
[»] chr5 (4 HSPs)
chr5 (114-277)||(16511315-16511477)
chr5 (12-277)||(17469112-17469365)
chr5 (48-143)||(23373522-23373617)
chr5 (108-148)||(624796-624836)
[»] scaffold0316 (1 HSPs)
scaffold0316 (118-265)||(19460-19606)
[»] scaffold0016 (1 HSPs)
scaffold0016 (48-143)||(18848-18943)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 277
Target Start/End: Complemental strand, 15244765 - 15244501
Alignment:
Q  12 aagaatcctagttagatctcaacacttccagattcttccaagatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagtacacaggga 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  15244765 aagagtcctagttagatctcaacacttccagattcttccaagatctagtacttgtacaaaacagtctctcttgttcccgtcacctttcagtacacaggga 15244666  T
Q  112 cgtaactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15244665 cgtaactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatga 15244566  T
Q  212 tttttagttaaaaacagtttgtttgaaaggagcacgaagctatagctttataaaccttaagcaaag 277  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15244565 tttttagtt-aaaacagtttgtttgaaaggagcacgaagctatagctttataaaccttaagcaaag 15244501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 114 - 277
Target Start/End: Original strand, 39440267 - 39440431
Alignment:
Q  114 taactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatgatt 213  Q
    ||||| |||||||||||||||||||||||||| ||| |  ||||| ||| ||||||||||  | ||||||||||||||| |||||| |||||  | ||||    
T  39440267 taacttatatcaaacaaacattttccattcccttacccaatcggtataagggaactataatgtcaaaagtaaaagagataaagttttacttttgaagatt 39440366  T
Q  214 tttagttaaaa-acagtttgtttgaaaggagcacgaagctatagctttataaaccttaagcaaag 277  Q
    || |||||||| | |||||||||||||| ||| |||||||||||||||||||| |||||||||||    
T  39440367 ttgagttaaaatatagtttgtttgaaagaagcgcgaagctatagctttataaatcttaagcaaag 39440431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 6243133 - 6242907
Alignment:
Q  12 aagaatcctagttagatctcaacacttccagattcttccaagatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagtacacaggga 111  Q
    |||| |||||||||||||| |   ||| |||| ||||||||||||||||  |||| ||| ||| ||| |||| |||| ||||||| |   |||  || ||    
T  6243133 aagagtcctagttagatcttagtgctttcagactcttccaagatctagtttttgttcaatacagtctatcttattcctgtcacctctcgatacttagaga 6243034  T
Q  112 cgtaactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatga 211  Q
    |||||||||||||||||||||||||||||||  ||||  ||| |||| | || ||||||||| || ||||||||||||||| ||||||||||||  | ||    
T  6243033 cgtaactcatatcaaacaaacattttccattatcatatccttccggtctcaaagaactataacataaaaagtaaaagagattaagtttcacttttgaaga 6242934  T
Q  212 tttttagttaaaaacagtttgtttgaaa 239  Q
    |||| |||| |||||| |||||||||||    
T  6242933 ttttgagtt-aaaacaatttgtttgaaa 6242907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 277
Target Start/End: Complemental strand, 21502297 - 21502137
Alignment:
Q  114 taactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatgatt 213  Q
    ||||||||||||||||| ||| ||||||||  |||| |||||||  | | |||||||||| ||  |||| | |||||||||||||| |||||||| ||      
T  21502297 taactcatatcaaacaagcatgttccattcttataccctttcggacttagggaactataacattgaaagaagaagagatcaagttttactttcaaaga-- 21502200  T
Q  214 tttagttaaaaacagtttgtttgaaaggagcacgaagctatagctttataaaccttaagcaaag 277  Q
    || |||| ||| ||||||| ||||||| ||| |||| |||||||||||| || | |||||||||    
T  21502199 ttgagtt-aaatcagtttgcttgaaagaagcgcgaaactatagctttatgaatcctaagcaaag 21502137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 240
Target Start/End: Original strand, 47899995 - 47900158
Alignment:
Q  76 tctctcttgttcccgtcaccttttagtacacagggacgtaactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaa 175  Q
    |||||||||||||| |||||||| ||| || | |||| |||||| |||| |||||| | ||||||||| ||||||||||| |  | | |||||||||  |    
T  47899995 tctctcttgttcccatcacctttcagttcataaggacataactcgtatctaacaaaaaatttccattctcatactctttcagcctcagggaactatagca 47900094  T
Q  176 tgaaaagtaaaagagatcaagtttcactttcaatgatttttagttaaaaacagtttgtttgaaag 240  Q
    | ||||| |||| ||||||| ||||||||| ||   |||| |||| |||| ||||||||||||||    
T  47900095 tcaaaagcaaaatagatcaaatttcacttttaaatgttttgagtt-aaaagagtttgtttgaaag 47900158  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 15878160 - 15878088
Alignment:
Q  127 acaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagttt 199  Q
    |||||||| ||||||||||||||| | ||||| | |||||||||||| |  | ||||||||||||||||||||    
T  15878160 acaaacatattccattcccatactttgtcggtctcaaggaactataacactagaagtaaaagagatcaagttt 15878088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 19709764 - 19709693
Alignment:
Q  76 tctctcttgttcccgtcaccttttagtacacagggacgtaactcatatcaaacaaacattttccattcccat 147  Q
    |||||||||||||| |  |||||  ||||  |||||| ||||||||||||||||||||| || |||||||||    
T  19709764 tctctcttgttcccatatcctttcggtacttagggacataactcatatcaaacaaacatctttcattcccat 19709693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 1972570 - 1972516
Alignment:
Q  80 tcttgttcccgtcaccttttagtacacagggacgtaactcatatcaaacaaacat 134  Q
    |||||||| |||| ||||| |||||  ||| ||||||||||||||||||||||||    
T  1972570 tcttgttctcgtctcctttcagtacttaggaacgtaactcatatcaaacaaacat 1972516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 21 - 277
Target Start/End: Complemental strand, 14275215 - 14274961
Alignment:
Q  21 agttagatctcaacacttccagattcttccaagatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagtacacagggacgtaactca 120  Q
    |||||||||| | | |||| || ||| |||||||||||||||| || ||||| | || |||||||||||||||| ||||| |||| |||||||||||||     
T  14275215 agttagatcttagcgcttctaggttcctccaagatctagtactcgtgcaaaatagtcgctcttgttcccgtcactttttaatacatagggacgtaactct 14275116  T
Q  121 tatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatgatttttagtt 220  Q
    ||||||||||||||||| |||||||| |  |||||||||| | ||| |||||  ||  |||||||||| |||||||||| ||||| || ||||||| |||    
T  14275115 tatcaaacaaacatttttcattcccacaacctttcggtttcagggatctatagcatttaaagtaaaagtgatcaagtttgacttttaaagatttttcgtt 14275016  T
Q  221 aaaaacagtttgtttgaaaggagcacgaagctatagctttataaaccttaagcaaag 277  Q
      |||||||||||||||||  | | |||||||||| ||||||||| |||||||||||    
T  14275015 -taaacagtttgtttgaaa-aaacgcgaagctataactttataaatcttaagcaaag 14274961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 984722 - 984466
Alignment:
Q  20 tagttagatctcaacacttccag-attcttccaagatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagtacacagggacgtaact 118  Q
    ||||||||||||| | ||| ||| ||||||| ||||| || |||| || ||||| | |||||||  ||||| ||| ||||| || || ||||||||||||    
T  984722 tagttagatctcagcgctttcaggattcttc-aagatataatactcgtgcaaaatagtctctctcattcccatcaacttttggttcatagggacgtaact 984624  T
Q  119 catatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatgatttttag 218  Q
    |||||||||||||||||||| |||| || || |||||||||| | |||||||||  || |||||||||||||||  |||||||||| ||| |||||| ||    
T  984623 catatcaaacaaacattttcaattcacacaccctttcggttttagggaactatagcatcaaaagtaaaagagattgagtttcacttacaaagattttgag 984524  T
Q  219 ttaaaaacagtttgtttgaaaggagcacgaagctatagctttataaaccttaagcaaag 277  Q
    |||||| || ||||||| |||| ||||||||| |||||||||||||| ||||| |||||    
T  984523 ttaaaatca-tttgtttaaaagaagcacgaagttatagctttataaatcttaaacaaag 984466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 26572338 - 26572607
Alignment:
Q  7 gtgagaagaatcctagttagatctcaacacttccagattcttccaagatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagtacac 106  Q
    |||| |||| |||||||||||||||| ||||| |||  |||||||| ||||||| || || ||||  | ||||||||||| || ||||||||  || ||     
T  26572338 gtgacaagagtcctagttagatctcagcactttcaggctcttccaatatctagtcctcgtgcaaattagtctctcttgttaccatcacctttcggttcat 26572437  T
Q  107 agggacgtaactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaag-taaaagagatcaagtttcacttt 205  Q
    |||||| |||||||||||||||||||||||| ||||| ||||| || ||||| | | | |||||||| || |||||  |||| |||| ||||||||||||    
T  26572438 agggacttaactcatatcaaacaaacatttttcattctcataccctatcggtgtcacgaaactataacatcaaaagaaaaaatagattaagtttcacttt 26572537  T
Q  206 caatgatttttagttaaaaacagtttgtttgaaaggagcacgaagctatagctttataaaccttaagcaaa 276  Q
     || |||||| |||| |||||| |||||||||||| ||||||||| | || ||||||||| ||||||||||    
T  26572538 taaagattttgagtt-aaaacattttgtttgaaagaagcacgaagttgtatctttataaatcttaagcaaa 26572607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 2476194 - 2476303
Alignment:
Q  45 tcttccaagatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagtacacagggacgtaactcatatcaaacaaacattttccattcc 144  Q
    ||||||||||| ||  |||||| |||||||||||||||||||||| ||| |||| |||||| || ||||||||||||||||||||||||||||||||||     
T  2476194 tcttccaagatgtatcacttgtgcaaaacaatctctcttgttcccatcatctttcagtacatagcgacgtaactcatatcaaacaaacattttccattct 2476293  T
Q  145 catactcttt 154  Q
    ||||| ||||    
T  2476294 catacccttt 2476303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 273
Target Start/End: Complemental strand, 16803923 - 16803770
Alignment:
Q  118 tcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatgattttta 217  Q
    |||||||||||||| || ||||||||| |||| || | ||| | |||||| ||||  ||  ||||||||||||||||||||| |||||||| |||||| |    
T  16803923 tcatatcaaacaaa-atgttccattccaataccctcttggtatcaaggaaatatagcattgaaagtaaaagagatcaagttttactttcaaagattttga 16803825  T
Q  218 gttaaaaacagtttgtttgaaaggagcacgaagctatagctttataaaccttaagc 273  Q
    |||||   ||||||||||||||| ||| |||||||||||||||||||| |||||||    
T  16803824 gttaatt-cagtttgtttgaaagaagcgcgaagctatagctttataaatcttaagc 16803770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 76 - 240
Target Start/End: Complemental strand, 18152309 - 18152147
Alignment:
Q  76 tctctcttgttcccgtcaccttttagtacacagggacgtaactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaa 175  Q
    |||| |||||||| | ||||||| |||||| ||| | |||||| |||||||||||| | ||||||||| | ||| |||||||||  | ||||| |||| |    
T  18152309 tctcgcttgttcctgccacctttcagtacataggaatgtaactgatatcaaacaaaaaatttccattctcctaccctttcggttgta-ggaaccataaca 18152211  T
Q  176 tgaaaagtaaaagagatcaagtttcactttcaatgatttttagttaaaaacagtttgtttgaaag 240  Q
    | ||||||||||||||||| |||| |||||||| |||||||| || |||||| ||||||||||||    
T  18152210 ttaaaagtaaaagagatcatgttttactttcaaagattttta-tttaaaacactttgtttgaaag 18152147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 45957128 - 45956879
Alignment:
Q  12 aagaatcctagttagatctcaacacttccagattcttccaagatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagtacacaggga 111  Q
    |||| |||| ||||||||||||| |||||||  |||||||||||||| |||| ||  |||  | ||| | ||| |||| |||||||||  | || || ||    
T  45957128 aagagtcctggttagatctcaacgcttccaggctcttccaagatctaatactcgtgaaaattagtctatgttgatcccttcaccttttgattcatagaga 45957029  T
Q  112 cgtaactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatga 211  Q
    |  || ||||||||||||||||| ||||||||| |||| |||| ||| |   |||||||||| ||   || ||||||||||||| ||| ||||  || ||    
T  45957028 ca-aattcatatcaaacaaacatgttccattcctatacccttttggtctctgggaactataacatttgaactaaaagagatcaatttttacttctaaaga 45956930  T
Q  212 tttttagttaaaaacagtttgtttgaaaggagcacgaagctatagctttata 263  Q
    ||||   |||||  ||||||||||||||| ||||||||| ||||||||||||    
T  45956929 ttttgcattaaat-cagtttgtttgaaagaagcacgaagttatagctttata 45956879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 265
Target Start/End: Complemental strand, 23104083 - 23103898
Alignment:
Q  78 tctcttgttcccgtcaccttttagtacacagggacgtaactcatatcaaacaaacatt-ttccattcccatactctttcggtttaaaggaactataaaat 176  Q
    ||||||| |||| |||||||| | |||| | |||| |||||||||||||||||| | | |||||||||||||| || ||||  | | ||||||||| |||    
T  23104083 tctcttgatcccttcacctttcaatacatatggac-taactcatatcaaacaaaaaatgttccattcccataccctatcggcctcagggaactatagaat 23103985  T
Q  177 gaaaagtaaaagagatcaagtttcactttcaatgatttttagttaaaaacagtttgtttgaaaggagcacgaagctatagctttataaa 265  Q
     | | ||| ||||||| |||||| || ||||| |||||| |||| ||| || |||||||||||| || | ||| |||||||||||||||    
T  23103984 tagaggtagaagagattaagttttacgttcaaagattttgagtt-aaatcaatttgtttgaaagaagtaggaa-ctatagctttataaa 23103898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 29541946 - 29542031
Alignment:
Q  186 aagagatcaagtttcactttcaatgatttttagttaaaaacagtttgtttgaaaggagcacgaagctatagctttataaaccttaag 272  Q
    |||||||||||||| ||||| || |||||| |||||||| ||||||||||||||| ||   ||||| ||||||||||||| ||||||    
T  29541946 aagagatcaagttttacttttaaagattttgagttaaaa-cagtttgtttgaaagaagtgtgaagccatagctttataaatcttaag 29542031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 8876846 - 8876807
Alignment:
Q  109 ggacgtaactcatatcaaacaaacattttccattcccata 148  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  8876846 ggacgtaactcatatcaaacaaacattttccattctcata 8876807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 29541834 - 29541923
Alignment:
Q  52 agatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagtacacagggacgtaactcatatcaaacaaacattttccatt 142  Q
    |||||||||||| || ||||  | |||||||||||||  ||||||| |  | || |||||| |||||||||||||||||||||||||||||    
T  29541834 agatctagtactcgtgcaaattagtctctcttgttccattcaccttctgatgcatagggac-taactcatatcaaacaaacattttccatt 29541923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 72 - 277
Target Start/End: Complemental strand, 4225771 - 4225567
Alignment:
Q  72 acaatctctcttgttcccgtcaccttttagtacacagggacgtaactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactat 171  Q
    |||| ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||   ||| |||||||| | |  |||||||    
T  4225771 acaacctctctttttcccgtcaccttttagtacatagggacgtaagtcatatcaaacaaacatttttcattcatttaccctttcggtctcatagaactat 4225672  T
Q  172 aaaatgaaaagtaaaagagatcaagtttcactttcaatgatttttagttaaaaacagtttgtttgaaaggagcacgaagctatagctttataaaccttaa 271  Q
    || |  ||||| |||||||||||| ||||||||| || ||| || |||| |||||| |||||||||||  ||||||||||||||  |||||||| || ||    
T  4225671 aacacaaaaagcaaaagagatcaattttcacttttaaagatcttgagtt-aaaacaatttgtttgaaataagcacgaagctataattttataaatctaaa 4225573  T
Q  272 gcaaag 277  Q
    ||||||    
T  4225572 gcaaag 4225567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 12109600 - 12109793
Alignment:
Q  12 aagaatcctagttagatctcaacacttccagattcttccaagatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagtacacaggga 111  Q
    |||| |||||||||||||||||| |||  ||  ||||| |||||| |||||| || ||||||||||||||||||||  ||| |||||   | || | |||    
T  12109600 aagagtcctagttagatctcaacgcttataggctcttctaagatcaagtactcgtgcaaaacaatctctcttgttcatgtcgcctttcgattcataagga 12109699  T
Q  112 cgtaactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcacttt 205  Q
    | ||||||| |||||||||| |||| ||||||||||||||||| ||| | || ||||||||| || ||||||||||||||||||||||||||||    
T  12109700 cataactcacatcaaacaaaaatttgccattcccatactcttttggtcttaaagaactataacatcaaaagtaaaagagatcaagtttcacttt 12109793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 240
Target Start/End: Original strand, 44344271 - 44344396
Alignment:
Q  114 taactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatgatt 213  Q
    ||||||||||||||||||||| |||||||| ||||| || ||||| || ||||||||||| || ||||| |||||||||||||||| ||||||||  |||    
T  44344271 taactcatatcaaacaaacatgttccattctcataccctctcggtctagaggaactataacatcaaaagcaaaagagatcaagttttactttcaaatatt 44344370  T
Q  214 tttagttaaaaacagtttgtttgaaag 240  Q
    || |||| |||||| ||||||||||||    
T  44344371 ttaagtt-aaaacaatttgtttgaaag 44344396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 277
Target Start/End: Original strand, 7354532 - 7354799
Alignment:
Q  12 aagaatcctagttagatctcaacacttccagattcttccaagatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagtacacaggga 111  Q
    |||| ||||| |||||||| | ||||||||   |||| ||| |||||||  |||| |||||||||||||||||||| ||||| || |   |||  |||||    
T  7354532 aagagtcctaattagatcttaccacttccaagctctttcaatatctagtttttgttcaaaacaatctctcttgttctcgtcatctctcgatacttaggga 7354631  T
Q  112 cgtaactcatat----caaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttca 207  Q
    ||||||||||||    ||||||||||||||| |||| ||||| |  || || | | |||||||||| || | |||||||| || |||| |||||||||||    
T  7354632 cgtaactcatataaaacaaacaaacattttctattctcataccccctctgtctcagggaactataacatcataagtaaaa-aggtcaaatttcactttca 7354730  T
Q  208 atgatttttagttaaaaacagtttgtttgaaaggagcacgaagctatagctttataaaccttaagcaaag 277  Q
    | |||||| || | |||||| |||||||||||| | ||| ||| ||| |||||||||  |||||||||||    
T  7354731 aagattttgag-tgaaaacaatttgtttgaaagaaacacaaagatattgctttataagtcttaagcaaag 7354799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 277
Target Start/End: Original strand, 19940642 - 19940840
Alignment:
Q  76 tctctcttgttcccgtcaccttttagtacacagggacgtaactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaa 175  Q
    |||||||| ||||  | |||||||||| || |||||| ||||||||||||||||||||| ||   ||||| ||  |  ||||| | | |||||||||| |    
T  19940642 tctctcttattcctttaaccttttagt-catagggac-taactcatatcaaacaaacatgttttgttcccttatccaatcggtatcagggaactataaca 19940739  T
Q  176 tgaaaagtaaaagagatcaagtttcactttcaatgatttttagttaaaaacagtttgtttgaaaggagcacgaagctatagctttataaaccttaagcaa 275  Q
    | ||||||||||||||||| |||| |||||||| |||||| |||| ||||  |||| |||||||| ||||||||||||||  ||||| ||  ||||||||    
T  19940740 tcaaaagtaaaagagatcatgttttactttcaaagattttgagtt-aaaatggtttatttgaaagaagcacgaagctataattttattaattttaagcaa 19940838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 114 - 277
Target Start/End: Complemental strand, 10179711 - 10179548
Alignment:
Q  114 taactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatgatt 213  Q
    |||||||||||||||||||||||||||||||| | | |  ||||| | | ||| |||||| || |||||||||||||||||| || | |||| || ||||    
T  10179711 taactcatatcaaacaaacattttccattcccttgcccgatcggtatcagggatctataacatcaaaagtaaaagagatcaatttacccttttaaagatt 10179612  T
Q  214 tttagttaaaaacagtttgtttgaaaggag-cacgaagctatagctttataaaccttaagcaaag 277  Q
    || |||| |||| | |||||||||||| || |  |||| |||| ||||||||| |||||||||||    
T  10179611 ttgagtt-aaaataatttgtttgaaagaagtcgtgaagttataactttataaatcttaagcaaag 10179548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 240
Target Start/End: Original strand, 21201692 - 21201817
Alignment:
Q  114 taactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatgatt 213  Q
    ||||||||||||||||||||| ||||||||  |||| || || || | | |||||| ||| ||  |||| |||||||||| ||||| |||||||| ||||    
T  21201692 taactcatatcaaacaaacatgttccattctaataccctctcagtctcatggaactttaacattgaaagcaaaagagatcgagttttactttcaaagatt 21201791  T
Q  214 tttagttaaaaacagtttgtttgaaag 240  Q
    || |||| ||||| |||||||||||||    
T  21201792 ttgagtt-aaaacggtttgtttgaaag 21201817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 40088249 - 40088480
Alignment:
Q  12 aagaatcctagttagatctcaacacttcca-gattcttccaagatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagtacacaggg 110  Q
    |||| |||||||||||||||||| |||  | |  || ||||||||||||||||  | ||||  | |||| ||||||||| |||||||||||| || || |    
T  40088249 aagagtcctagttagatctcaacgcttaaaaggctcctccaagatctagtactcatgcaaagtagtctcccttgttcccttcaccttttagtgcatagag 40088348  T
Q  111 acgtaactcatat----caaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttc 206  Q
    || ||||||||||    ||||||||||||||||| |||| ||| |  ||  | | | |||||||||| ||  ||| ||||| ||||||||||| |||||     
T  40088349 ac-taactcatattaaacaaacaaacattttccaatcccttacccaatcaatatcagggaactataacatctaaattaaaaaagatcaagttttactttt 40088447  T
Q  207 aatgatttttagttaaaaacagtttgtttgaaag 240  Q
    || |||| | |||| |||||||||| ||||||||    
T  40088448 aaagattgtaagtt-aaaacagtttatttgaaag 40088480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 51461947 - 51461841
Alignment:
Q  118 tcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatgattttta 217  Q
    ||||||||||||| ||| ||||||| |||||| || ||||  | |||||||||||  || | |||| |||| |||||| | ||||||| || |||||| |    
T  51461947 tcatatcaaacaatcatgttccatttccataccctgtcgggattaaggaactatagcattagaagtgaaagtgatcaattctcacttttaaggattttga 51461848  T
Q  218 gttaaaa 224  Q
    |||||||    
T  51461847 gttaaaa 51461841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 2916216 - 2916313
Alignment:
Q  76 tctctcttgttcccgtcaccttttagtacacagggacgtaactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataa 173  Q
    |||||||| ||||| |||||| || || || |  || ||||||||||||||||||||| ||| ||||| ||||| || ||||| | || |||||||||    
T  2916216 tctctcttattcccttcacctcttggtccataaagatgtaactcatatcaaacaaacacttttcattctcataccctatcggtctcaatgaactataa 2916313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 277
Target Start/End: Original strand, 27466931 - 27467195
Alignment:
Q  12 aagaatcctagttagatctcaacacttccagattcttccaagatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagtacacaggga 111  Q
    |||| |||||||||||||||||| || ||||| ||||  |||||| |||||| || |||| || |||||||| |||| ||||||||| || |   |  ||    
T  27466931 aagagtcctagttagatctcaacgct-ccagactcttataagatcaagtactcgtgcaaatcagtctctcttcttccagtcacctttcagaatgtaaaga 27467029  T
Q  112 cgtaactcatatcaaacaaacattttccattcccatactctttcggtttaaag-gaactataaaatgaaaagtaaaagagatcaagtttcactttcaatg 210  Q
    | |||||||||| |||| |||||||||||||| ||||| ||||||  ||   | ||||||||| || ||||||||||||||||||||||||||||||| |    
T  27467030 cataactcatatgaaacgaacattttccattcacataccctttcgcctttcggtgaactataacatcaaaagtaaaagagatcaagtttcactttcaagg 27467129  T
Q  211 atttttagttaaaaacagtttgtttgaaaggagcacgaagctatagctttataaaccttaagcaaag 277  Q
    |||||||||| ||||||| || |||||||| ||||| ||| |||| | ||||||| ||||| |||||    
T  27467130 atttttagtt-aaaacagattttttgaaagaagcaccaagatataacgttataaatcttaaacaaag 27467195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 265
Target Start/End: Original strand, 25894597 - 25894809
Alignment:
Q  49 ccaagatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagta--cacagggacgtaactcatatcaaacaaacattttccattccca 146  Q
    ||||||||||||||| || ||||  | |||||||||||||  ||||||||| |||  || |||||| ||| ||||||||||||||||| |||||||||||    
T  25894597 ccaagatctagtactcgtgcaaagtagtctctcttgttccgttcacctttt-gtatgcatagggac-taagtcatatcaaacaaacatgttccattccca 25894694  T
Q  147 tactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatgatttttagttaaaaacagtttgtttgaaaggagcac 246  Q
    ||| || ||||| | |||||||||||  || | || |||||||||| |||||| | ||  || |||||| |||  |||  ||||||||||||||   |||    
T  25894695 taccctgtcggtctcaaggaactatagcattagaaataaaagagataaagttttaattctaaagattttgagt--aaattagtttgtttgaaag--acac 25894790  T
Q  247 gaagctatagctttataaa 265  Q
    ||||||||| |||||||||    
T  25894791 gaagctatacctttataaa 25894809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 33855642 - 33855765
Alignment:
Q  121 tatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatgatttttagtt 220  Q
    |||||||||||||| ||||||||||||||||| || |  ||| |||||||||  || ||||||||||| |||||| | || |||  ||||||||  ||||    
T  33855642 tatcaaacaaacatgttccattcccatactctgtcaggataagggaactatagcattaaaagtaaaagtgatcaattctcccttctaatgatttcgagtt 33855741  T
Q  221 aaaaacagtttgtttgaaaggagca 245  Q
     ||| ||||||||||||||| ||||    
T  33855742 -aaatcagtttgtttgaaagaagca 33855765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 42295275 - 42295340
Alignment:
Q  78 tctcttgttcccgtcaccttttagtacacagggacgtaactcatatcaaacaaacattttccattc 143  Q
    |||||||||| |||||||| |  ||||  |||||| |||||||||||||||||||||||| |||||    
T  42295275 tctcttgttctcgtcacctatcggtacttagggacataactcatatcaaacaaacatttttcattc 42295340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 9789684 - 9789755
Alignment:
Q  183 taaaagagatcaagtttcactttcaatgatttttagttaaaaacagtttgtttgaaaggagcacgaagctata 255  Q
    |||||| |||||||||| ||||||||  ||||| |||||||||  ||||||||||||| | ||||||||||||    
T  9789684 taaaagtgatcaagtttaactttcaagcattttgagttaaaaat-gtttgtttgaaagaaacacgaagctata 9789755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 277
Target Start/End: Complemental strand, 862951 - 862688
Alignment:
Q  12 aagaatcctagttagatctcaacacttccagattcttccaagatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagtacacaggga 111  Q
    |||| |||||||| ||||| | | |||||||  || |||||||||||||||| || ||||  || |||| || ||| | ||||||||  || || ||| |    
T  862951 aagagtcctagttggatcttagcgcttccaggctcctccaagatctagtactcgtgcaaagtaacctctttttttctcatcacctttcggttcataggaa 862852  T
Q  112 cgtaactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatga 211  Q
    ||||||||||||||||||||||||||||||||| ||||  ||||||||| | ||||| |||  ||  |||| |||| ||||||||||||||||| || ||    
T  862851 cgtaactcatatcaaacaaacattttccattcctataccttttcggtttcagggaacaatatcatctaaagcaaaatagatcaagtttcacttttaaaga 862752  T
Q  212 tttttagttaaaaacagtttgtttgaaaggagcacgaagctatagctttataaaccttaagcaaag 277  Q
    |||| |||| |||||| |||||||||||  ||||||||| | ||||||| |||| |||||||||||    
T  862751 ttttgagtt-aaaacaatttgtttgaaaaaagcacgaagttgtagcttt-taaatcttaagcaaag 862688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 12 - 277
Target Start/End: Original strand, 19452194 - 19452456
Alignment:
Q  12 aagaatcctagttagatctcaacacttccagattcttccaagatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagtacacaggga 111  Q
    |||| ||||| |||||||||| | |||| ||| ||||||||||||||||  |||| ||||||||| ||||||||| | ||||| | |  || |  || ||    
T  19452194 aagagtcctaattagatctcagcgcttc-agactcttccaagatctagtttttgttcaaaacaatatctcttgtttctgtcacttctcggtccgtagaga 19452292  T
Q  112 cgtaactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatga 211  Q
    |||||||| ||||||||||||||||| || |   |||| || ||||| | | |||||||||| || |||| |||| | ||||||||||||||||||| ||    
T  19452293 cgtaactcttatcaaacaaacattttacaatttgataccctctcggtctcagggaactataacataaaaaataaa-gtgatcaagtttcactttcaaaga 19452391  T
Q  212 tttttagttaaaaacagtttgtttgaaaggagcacgaagctatagctttataaaccttaagcaaag 277  Q
    |||| |||||||| ||||||||||||||| ||| ||||| ||||| ||||||||  ||||||||||    
T  19452392 ttttgagttaaaa-cagtttgtttgaaagaagcgcgaagttatagatttataaatattaagcaaag 19452456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 12 - 277
Target Start/End: Complemental strand, 19528882 - 19528620
Alignment:
Q  12 aagaatcctagttagatctcaacacttccagattcttccaagatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagtacacaggga 111  Q
    |||| ||||| |||||||||| | |||| ||| ||||||||||||||||  |||| ||||||||| ||||||||| | ||||| | |  || |  || ||    
T  19528882 aagagtcctaattagatctcagcgcttc-agactcttccaagatctagtttttgttcaaaacaatatctcttgtttctgtcacttctcggtccgtagaga 19528784  T
Q  112 cgtaactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatga 211  Q
    |||||||| ||||||||||||||||| || |   |||| || ||||| | | |||||||||| || |||| |||| | ||||||||||||||||||| ||    
T  19528783 cgtaactcttatcaaacaaacattttacaatttgataccctctcggtctcagggaactataacataaaaaataaa-gtgatcaagtttcactttcaaaga 19528685  T
Q  212 tttttagttaaaaacagtttgtttgaaaggagcacgaagctatagctttataaaccttaagcaaag 277  Q
    |||| |||||||| ||||||||||||||| ||| ||||| ||||| ||||||||  ||||||||||    
T  19528684 ttttgagttaaaa-cagtttgtttgaaagaagcgcgaagttatagatttataaatattaagcaaag 19528620  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 255
Target Start/End: Original strand, 30117538 - 30117657
Alignment:
Q  134 ttttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatgatttttagttaaaaacagtttgt 233  Q
    ||||||||||| |||| |||||||||| | |||||||||| || ||||| |||| |||||||||||||||||  | |||||| |||| ||||||||||||    
T  30117538 ttttccattcc-atacactttcggtttcagggaactataacatcaaaagcaaaatagatcaagtttcacttttgaagattttgagtt-aaaacagtttgt 30117635  T
Q  234 ttgaaaggagcacgaagctata 255  Q
    || |||| || | |||||||||    
T  30117636 ttaaaagaaggatgaagctata 30117657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 265
Target Start/End: Original strand, 13217732 - 13217775
Alignment:
Q  222 aaaacagtttgtttgaaaggagcacgaagctatagctttataaa 265  Q
    |||||| |||||||||||| |||||||||||||| |||||||||    
T  13217732 aaaacaatttgtttgaaagaagcacgaagctataactttataaa 13217775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 277
Target Start/End: Complemental strand, 16511477 - 16511315
Alignment:
Q  114 taactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatgatt 213  Q
    ||||||||||||||||||||| ||  |||| ||||| ||  | || | | |||||||||| ||  |||| ||||||| |||| ||| | |||||| ||||    
T  16511477 taactcatatcaaacaaacatgttgtattcacataccctcacagtctcagggaactataacattgaaagcaaaagaggtcaaattttattttcaaagatt 16511378  T
Q  214 tttagttaaaaacagtttgtttgaaaggagcacgaagctatagctttataaaccttaagcaaag 277  Q
    |||||||||| | |||||||||||||| ||| |||  ||| | ||||||||| ||||| |||||    
T  16511377 tttagttaaata-agtttgtttgaaagaagcgcgacactagacctttataaatcttaaccaaag 16511315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 277
Target Start/End: Complemental strand, 17469365 - 17469112
Alignment:
Q  12 aagaatcctagttagatctcaacacttccagattcttccaagatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagtacacaggga 111  Q
    |||| |||||||||||||| |   ||||||   ||| |||||||||||||||  | ||||||||| | ||||||   |||||| ||| || ||| | |||    
T  17469365 aagagtcctagttagatcttagtgcttccaagctctcccaagatctagtactcatgcaaaacaatatatcttgtcgtcgtcacatttgagcacatatgga 17469266  T
Q  112 cgtaactcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatga 211  Q
    ||||| |||||||||||||||| |         ||| |||||||||||||  ||||| |||| || ||||||||| ||||| | |||||||||| || ||    
T  17469265 cgtaattcatatcaaacaaacact---------cattctctttcggtttag-ggaacaataacatcaaaagtaaa-gagataacgtttcacttttaaaga 17469177  T
Q  212 tttttagttaaaaacagtttgtttgaaaggagcacgaagctatagctttataaaccttaagcaaag 277  Q
    |||| |||||||  || |||||||||||| |||   |||||||| ||||| ||| |||||||||||    
T  17469176 ttttgagttaaac-caatttgtttgaaagaagcgaaaagctataactttaaaaaacttaagcaaag 17469112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 23373617 - 23373522
Alignment:
Q  48 tccaagatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagtacacagggacgtaactcatatcaaacaaacattttccattc 143  Q
    |||||||||||||||| || ||||  | |||||||||||||| |||||| | | |  | ||| || ||||||||||||||||||||| ||||||||    
T  23373617 tccaagatctagtactagtgcaaattagtctctcttgttcccttcacctctcattggataggaacttaactcatatcaaacaaacatattccattc 23373522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 624796 - 624836
Alignment:
Q  108 gggacgtaactcatatcaaacaaacattttccattcccata 148  Q
    ||||| |||||||||||||||||| |||||||||| |||||    
T  624796 gggacataactcatatcaaacaaatattttccatttccata 624836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 265
Target Start/End: Complemental strand, 19606 - 19460
Alignment:
Q  118 tcatatcaaacaaacattttccattcccatactctttcggtttaaaggaactataaaatgaaaagtaaaagagatcaagtttcactttcaatgattttta 217  Q
    ||||||||||||||| | ||||||||| |||  || | ||||| | |||||||||| || ||||  |||||  ||||||| |   |||||| |||||| |    
T  19606 tcatatcaaacaaacttgttccattccaataacctcttggtttcagggaactataacattaaaaacaaaagtaatcaagtcttgttttcaaagattttga 19507  T
Q  218 gttaaaaacagtttgtttgaaaggagcacgaagctatagctttataaa 265  Q
     | ||||||| |||||||||||  |||||| |||||||||||||||||    
T  19506 at-aaaaacaatttgtttgaaaaaagcacggagctatagctttataaa 19460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 18848 - 18943
Alignment:
Q  48 tccaagatctagtacttgtacaaaacaatctctcttgttcccgtcaccttttagtacacagggacgtaactcatatcaaacaaacattttccattc 143  Q
    |||||||||||||||| || ||||  | |||||||||||||| |||||| | | |  | ||| || ||||||||||||||||||||| ||||||||    
T  18848 tccaagatctagtactagtgcaaattagtctctcttgttcccttcacctctcattggataggaacttaactcatatcaaacaaacatattccattc 18943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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