View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_187 (Length: 284)
Name: NF20384_low_187
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_187 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 41312889 - 41312624
Alignment:
| Q |
1 |
aacagctgtaaaaactactatcatcgtaaaatatattaaagctgtaaaaaatattgaacttttcgtgttaattaattggattttttgctccataattcaa |
100 |
Q |
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| T |
41312889 |
aacagctgtaaaaactactatcatcgtaaaatatattaaagctgtaaaaaatattgaacttttcgtgttaatt----ggattttttgctccataattcaa |
41312794 |
T |
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| Q |
101 |
aacccttaaactaataagctcactgtttacgcatggttcatgacttctgatcactatttttctgagacaatgacttcatgtcactactactagtaacagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41312793 |
aacccttaaactaataagctcactgtttacgcatggttcatgacttctgatcactatttttctgagacaatgacttcatgtcactactactagtaacagg |
41312694 |
T |
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| Q |
201 |
agtgtgcattttagtccactatttatgtataattcttcttgattcatgttaacaccccagcacatatata |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
41312693 |
agtgtgcattttagtccactatttatgtataattcttcttgattcatgttaaccccccggcacatatata |
41312624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 16308222 - 16308008
Alignment:
| Q |
1 |
aacagctgtaaaaactactatcatcgtaaaatatattaaagctgtaaaaaatattgaacttttcgtgttaattaattggattttttgctccataattcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16308222 |
aacagctgtaaaaactactatcatcgtaaaatatattaaagctgtaaaaaatattgaacttttcgtgtt----aattggattttttgctccataattcaa |
16308127 |
T |
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| Q |
101 |
aacccttaaactaataagctcactgtttacgcatggttcatgacttctgatcactatttttctgagacaatgacttcatgtcactactactagtaacagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16308126 |
aacccttaaactaataagctcactgtttacgcatgg----tgacttctgatcactatttttctgaga---------catgtcactactactagtaacagg |
16308040 |
T |
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| Q |
201 |
agtgtgcattttagtccactatttatgtataa |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
16308039 |
agtgtgcattttagtccactatttatgtataa |
16308008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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