View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_19 (Length: 623)
Name: NF20384_low_19
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 7 - 606
Target Start/End: Original strand, 2366199 - 2366799
Alignment:
| Q |
7 |
tcgaagaaaatgcagtatccagaccctcatttcaagaaaaaacattataaaagaagaggtctgcagaagcctttggttggcgctattgtcgataatttat |
106 |
Q |
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| T |
2366199 |
tcgaaaaacatgcagtatccagaccctcatttcaagaaaaaacatcataaaagaagaggtctgcagaagcctttggttggtgctattgtcgataatttat |
2366298 |
T |
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| Q |
107 |
ctccaggaggacaggtatattttctgcatgctctaatataagttcactactcctttgattgttcattatgtcaattcaaatttatctttggttgttgatt |
206 |
Q |
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| T |
2366299 |
ctccagggggacatgtatattttctgcatgctctaatataagtt-actactcctttgattgttcattatgtcaattcaaatttatctttggttgttgatt |
2366397 |
T |
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| Q |
207 |
atggcaactcttaaagaagaatgccattgagaaaaaccataatgaagtcggg-attatgtgactacgaataggaagtgtggaacttccaagatatactga |
305 |
Q |
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| T |
2366398 |
atggcaactcttaaagaagaatgccgttgagaaaaaccataatgaagtcggggattatgtgactacgaataggaagtgtggaacttccaagatatgctga |
2366497 |
T |
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| Q |
306 |
tattccatgcctggacaagacttgagagattcttctgaagggaatgaagtaacagtgcatgtttgtgtaccagaagaagcagatgtgattgatctgttaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
2366498 |
tattccatgcctggacaagacttgagagattcttctgaagggaatgaagtaacagtgcatgtttgtgtaccaaaagaagcagatgtgattgatttgttaa |
2366597 |
T |
|
| Q |
406 |
agcttgagtgcaaccttgtccattccatgccagacatatatggaatggaaaaacagtacaattcacatgagaaaagtacacaggctcttaaaatgcttac |
505 |
Q |
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| T |
2366598 |
agcttgagtgcaaccttgtccattccatgcctgacatatatggaatggaaaaacagtacaaatcacatgagaaaagtacacatgctcttaaaatgcttac |
2366697 |
T |
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| Q |
506 |
caatgttttctctcttgtgaccagatattaataatttctctattttttccttatag-nnnnnnnttgaaatttgtcacttacgaaagaaaaaacttataa |
604 |
Q |
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| T |
2366698 |
caatgttttctctcttgtgaccagatattaataatttatctattttttccttatagaaaaaaaatttaaatttgtcacttacgaaagaaaaaacttataa |
2366797 |
T |
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| Q |
605 |
at |
606 |
Q |
| |
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|| |
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| T |
2366798 |
at |
2366799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 2362041 - 2362171
Alignment:
| Q |
16 |
atgcagtatccagaccctcatttcaagaaaaaacattataaaagaagaggtctgcagaagcctttggttggcgctattgtcgataatttatctccaggag |
115 |
Q |
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| T |
2362041 |
atgcagtgtccagaccctcatttaaagaaaaaatatcataaaagaagagttttgcaaaagcctttggttggcactattgtagataatttatctccagggg |
2362140 |
T |
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| Q |
116 |
gacaggtatattttctgcatgctctaatata |
146 |
Q |
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| T |
2362141 |
gacaggtatattttctgcatgctctaatata |
2362171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 2354058 - 2354180
Alignment:
| Q |
16 |
atgcagtatccagaccctcatttcaagaaaaaacattataaaagaagaggtctgcagaagcctttggttggcgctattgtcgataatttatctccaggag |
115 |
Q |
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||||||| |||||||||||||||||||||||||||| |||| ||||| | | ||||||||||||||||||| |||||||| |||||||||||||| || | |
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| T |
2354058 |
atgcagtgtccagaccctcatttcaagaaaaaacatcataagagaagggttttgcagaagcctttggttggtgctattgtagataatttatctcctgggg |
2354157 |
T |
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| Q |
116 |
gacaggtatattttctgcatgct |
138 |
Q |
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||||||||||||||||| ||||| |
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| T |
2354158 |
gacaggtatattttctgtatgct |
2354180 |
T |
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