View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_190 (Length: 283)
Name: NF20384_low_190
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_190 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 8874372 - 8874101
Alignment:
| Q |
1 |
catatggggtcttattctgcttcttcttatggttttacatttattaccattcttttgttagtataaatcattaccatacggaatgttggtcaccctcatt |
100 |
Q |
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| T |
8874372 |
catatggggtcttattctgcttcttcttatggttttacatttattaccattcttttgttagtataaatcattaccatacggaatgttggtcaccctcatt |
8874273 |
T |
|
| Q |
101 |
gaaagctaaagcattaaattaattttaagtgtgacatatacacctctttgatcatggagaggcttcaaggacccatcaattcttgtgtatgtatttcttt |
200 |
Q |
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| T |
8874272 |
gaaagctaaagcattaaattaattttaagtgtgacatatacacctctttgatcatggagaggcttcaaggacccatcaattcttgtgtatgtatttcttt |
8874173 |
T |
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| Q |
201 |
ctcttagttttgcattacattttttgcattgaatgcattatgttactattttcctaaaaattacatttctct |
272 |
Q |
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| T |
8874172 |
ctcttagttttgcattacattttttgcattgaatgcattatgttgctattttcctaaaaattacatttctct |
8874101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 8729949 - 8730024
Alignment:
| Q |
41 |
ttattaccattcttttgttagtataaatcattaccatacggaatgttggtcaccctcattgaaagctaaagcattaa |
117 |
Q |
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| T |
8729949 |
ttattaccattcttttttgtttataa-tcattaccatacggaatattggtcaccctcatggagagctaaagcattaa |
8730024 |
T |
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