View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_192 (Length: 282)
Name: NF20384_low_192
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_192 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 46789490 - 46789218
Alignment:
| Q |
1 |
ccatttggaataaactcataaacaagatacctaggtggtgttggagaattacaataaccaaaaagtctcacaagattaacatgttgaacactagctatag |
100 |
Q |
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| T |
46789490 |
ccatttggaataaactcataaacaagatacctaggtggtgttggagaattacaataaccaaaaagtctcacaagattaacatgttgaacactagctatag |
46789391 |
T |
|
| Q |
101 |
ctgaaacttctgatctaaattctctttcacctctttcttcaccatgaattcttttcacagcaactgaagttccatcattcaaaatgcctttgaaaactga |
200 |
Q |
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| T |
46789390 |
ctgaaacttctgatctaaattctctttcacctctttcttcaccatgaattcttttcacagcaactgaagttccatcattcaaaatgcctttgaaaactga |
46789291 |
T |
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| Q |
201 |
agctgatgaccctttaccgatgatagcttgaaaattatccgttgcttcttcaagctctttgtatcgatatttt |
273 |
Q |
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| T |
46789290 |
agctgatgaccctttaccgatgatagcttgaaaattatccgttgcttcttcaagttctttgtatcgatatttt |
46789218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 23466935 - 23467122
Alignment:
| Q |
16 |
tcataaacaagatacctaggtggtgttggagaattacaataaccaaaaagtctcacaagattaacatgttgaacactagctatagctgaaacttctgatc |
115 |
Q |
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||||||||||| |||||||| | || | |||||||||||| |||||||||||||||||||| ||||| |||||| |||||||||||| |||||||||| |
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| T |
23466935 |
tcataaacaaggtacctaggagctgaagaagaattacaatacccaaaaagtctcacaagattcacatgatgaacattagctatagctgcaacttctgatt |
23467034 |
T |
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| Q |
116 |
taaattctctttcacctctttcttcaccatgaattcttttcacagcaactgaagttccatcattcaaaatgcctttgaaaactgaagc |
203 |
Q |
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| T |
23467035 |
taaattctcttgctcctctttcttctgcatcaattcttttcacagcaaccgaagttccatcattgagaattcctttgaaaaccgaagc |
23467122 |
T |
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