View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_2 (Length: 822)

Name: NF20384_low_2
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_2
NF20384_low_2
[»] chr4 (9 HSPs)
chr4 (16-211)||(47293447-47293642)
chr4 (209-488)||(47293673-47293972)
chr4 (611-814)||(47294095-47294298)
chr4 (25-169)||(45876737-45876881)
chr4 (18-189)||(55705874-55706045)
chr4 (25-158)||(45858817-45858950)
chr4 (16-181)||(56208520-56208685)
chr4 (16-178)||(54304209-54304377)
chr4 (667-742)||(56043786-56043861)
[»] chr5 (3 HSPs)
chr5 (25-169)||(35854542-35854686)
chr5 (27-189)||(10521303-10521465)
chr5 (25-101)||(35802504-35802580)
[»] chr8 (2 HSPs)
chr8 (16-188)||(7972058-7972230)
chr8 (17-182)||(7961694-7961859)
[»] chr2 (1 HSPs)
chr2 (27-158)||(24357457-24357588)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-101; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 47293447 - 47293642
Alignment:
Q  16 caatgaccatagacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47293447 caatgaccatagacaagatggaagaggttgcacagggaaggatttggaccagtaaggacgcagtatctcatggtttggttgatgctattggtggactatc 47293546  T
Q  116 gcgcgctattgctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtggagcactcaatccctagtccgaatcttcctga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47293547 gcgcgctattgctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtggagcgctcaatccctagtccgaatcttcctga 47293642  T

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Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 209 - 488
Target Start/End: Original strand, 47293673 - 47293972
Alignment:
Q  209 tgatgggagggtctgggcccattgtaatggagctccattggctattggctattctctagttggatggaggga-------------------gttccattg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||                   |||||||||    
T  47293673 tgatgggagggtctgggcccattgtaatggagctccattggctattggctattctctcgttggatggagggactttgcccattctaatggagttccattg 47293772  T
Q  290 cggatggatggaaccatgtgagattttattttatttttgtcaagtagcttaggaggtagaaattcaactttgaatnnnnnnnnntttgttttatttt-tt 388  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||| ||    
T  47293773 cggatggatggaaccatgcgagattttattttatttttgtcaagtagcttaggaggtagaaattcaactttgaataaaaaaaaaattgttttattttttt 47293872  T
Q  389 gctattatgatagcttattataaacaattttcctaagttttctccctgcattattcaccatcttaagcacattggttcttacttttgcatctgttttctc 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47293873 gctattatgatagcttattataaacaattttcctaagttttctccctgcactattcaccatcttaagcacattggttcttacttttgcatctgttttctc 47293972  T

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Target: chr4; HSP #3
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 611 - 814
Target Start/End: Original strand, 47294095 - 47294298
Alignment:
Q  611 atttgtatttagacaaagacttttagacaaggaaatatttctctttcgtccttttcattaaactaaagatgcagagcttgtaattagtttataattgcag 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47294095 atttgtatttagacaaagacttttagacaaggaaatatttctctttcgtccttttcattaaactaaagatgcagagcttgtaattagtttataattgcag 47294194  T
Q  711 gcaattgtttttctttgggtgtataatccaaatatttatatatacactaataattattaaatgatggaatttgttccannnnnnnacttgaatatccctt 810  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||||    
T  47294195 gcaattgtttttctttgggtgtataatccaaatatttatatatacactaatcattattaaatgatggaatttgttccatttttttacttgaatatccctt 47294294  T
Q  811 tgct 814  Q
    ||||    
T  47294295 tgct 47294298  T

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Target: chr4; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 25 - 169
Target Start/End: Complemental strand, 45876881 - 45876737
Alignment:
Q  25 tagacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctat 124  Q
    ||||||||||||||||||||||||| || ||| |||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||| || |||||    
T  45876881 tagacaagatggaagaggttgcacaagggagggtttggaccggtaaggatgcagcatcccatggtttggttgatgctattggtgggctatctcgtgctat 45876782  T
Q  125 tgctatagcaaaattgaaggccaatatacctcaaaacagacaggt 169  Q
    |||||||||||||||||| || |||||||||||| ||||||||||    
T  45876781 tgctatagcaaaattgaaagctaatatacctcaagacagacaggt 45876737  T

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Target: chr4; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 55705874 - 55706045
Alignment:
Q  18 atgaccatagacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgc 117  Q
    ||||| ||||||||||||||||||||||| || || ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||  ||||||    
T  55705874 atgactatagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgc 55705973  T
Q  118 gcgctattgctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtggagcactcaa 189  Q
    | |||||||||||  |||||||||| || |||||||||||||||||| |||| | | ||||||||| |||||    
T  55705974 gtgctattgctattacaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctcaa 55706045  T

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Target: chr4; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 45858950 - 45858817
Alignment:
Q  25 tagacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctat 124  Q
    |||||||||||||||||| ||||||||  ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| || |||||    
T  45858950 tagacaagatggaagaggctgcacaggagagggtttggaccggtaaggatgcagtatctcatggtctggttgatgctattggtgggctatcacgtgctat 45858851  T
Q  125 tgctatagcaaaattgaaggccaatatacctcaa 158  Q
    ||||||||| ||||||||||||||||||||||||    
T  45858850 tgctatagccaaattgaaggccaatatacctcaa 45858817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 56208685 - 56208520
Alignment:
Q  16 caatgaccatagacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatc 115  Q
    ||||||| |||||  |||||||||||||||||||||| ||| ||| ||||||||| || ||| |||||| |||||||||||||||||||||||| |||||    
T  56208685 caatgactatagatgagatggaagaggttgcacaggggagggtttagaccggtaaagatgcactatctcttggtttggttgatgctattggtgggctatc 56208586  T
Q  116 gcgcgctattgctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtgga 181  Q
     || ||||||||||||||||||||||||||   |||||||||| ||| ||| || ||| |||||||    
T  56208585 tcgtgctattgctatagcaaaattgaaggctggtatacctcaagacaaacatgttactgttgtgga 56208520  T

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Target: chr4; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 54304209 - 54304377
Alignment:
Q  16 caatgaccatagacaagatggaagaggttgcacagggaagga------tttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtgg 109  Q
    ||||||| |||||||| |||||||||||| ||||||| |||       ||||||| ||||||||||||  |||||  |||||||||||||||||||| ||    
T  54304209 caatgacaatagacaaaatggaagaggttccacaggggagggggaaggtttggactggtaaggacgcaacatctctcggtttggttgatgctattggcgg 54304308  T
Q  110 actatcgcgcgctattgctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgt 178  Q
      | || || ||||||||||||||||||||||||||||||||||||||||| ||  |||| ||||||||    
T  54304309 gatgtctcgtgctattgctatagcaaaattgaaggccaatatacctcaaaatagtgaggttactcttgt 54304377  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 667 - 742
Target Start/End: Original strand, 56043786 - 56043861
Alignment:
Q  667 attaaactaaagatgcagagcttgtaattagtttataattgcaggcaattgtttttctttgggtgtataatccaaa 742  Q
    |||||||| ||||||||||   | |||||||||||||||||||||||||||||| | ||||||||||||| |||||    
T  56043786 attaaactgaagatgcagaatgtataattagtttataattgcaggcaattgtttatgtttgggtgtataacccaaa 56043861  T

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Target: chr5 (Bit Score: 113; Significance: 9e-57; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 35854542 - 35854686
Alignment:
Q  25 tagacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctat 124  Q
    ||||||||||| || |||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||    
T  35854542 tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat 35854641  T
Q  125 tgctatagcaaaattgaaggccaatatacctcaaaacagacaggt 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  35854642 tgctatagcaaaattgaaggccaatatacctcaaaacagacaggt 35854686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 27 - 189
Target Start/End: Original strand, 10521303 - 10521465
Alignment:
Q  27 gacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctattg 126  Q
    ||||||||| ||||| || ||||  | |||||||||| ||| |||||||||| |||||| |||||||||||||||||||||||  ||||||| |||||||    
T  10521303 gacaagatgaaagagattccacataggaggatttggatcgggaaggacgcagcatctcaaggtttggttgatgctattggtgggatatcgcgtgctattg 10521402  T
Q  127 ctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtggagcactcaa 189  Q
    |||| |||||||| |||||||||||||||||||||| |||||| | |||||| |||| |||||    
T  10521403 ctatcgcaaaattcaaggccaatatacctcaaaacaaacaggttaatcttgtcgagctctcaa 10521465  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 35802580 - 35802504
Alignment:
Q  25 tagacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgct 101  Q
    ||||||||||| || |||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35802580 tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgct 35802504  T

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Target: chr8 (Bit Score: 105; Significance: 5e-52; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 7972230 - 7972058
Alignment:
Q  16 caatgaccatagacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatc 115  Q
    |||||||  |||||||||||||||||||||||||| | ||||||||||||||||| || ||||||||| |||||||||| ||||||||  ||||||||||    
T  7972230 caatgactgtagacaagatggaagaggttgcacagaggaggatttggaccggtaaagatgcagtatctaatggtttggtcgatgctatcagtggactatc 7972131  T
Q  116 gcgcgctattgctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtggagcactca 188  Q
    ||| |||||||||||||||||||||||||||||| | |||||||||||||| || ||| ||||||||| ||||    
T  7972130 gcgtgctattgctatagcaaaattgaaggccaatcttcctcaaaacagacatgttactattgtggagctctca 7972058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 7961859 - 7961694
Alignment:
Q  17 aatgaccatagacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcg 116  Q
    |||||| |||||||||||||||||||||||||| || || |||||||| ||||| || ||| ||||| ||| |||||| ||||||||||||||| |||||    
T  7961859 aatgactatagacaagatggaagaggttgcacaagggagaatttggactggtaaagatgcaatatctaatgatttggtcgatgctattggtggaatatcg 7961760  T
Q  117 cgcgctattgctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtggag 182  Q
    | ||||||||||||||||||||||||||||||||| |||||||||| ||| || ||| ||||||||    
T  7961759 cacgctattgctatagcaaaattgaaggccaatattcctcaaaacaaacatgttactattgtggag 7961694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 24357457 - 24357588
Alignment:
Q  27 gacaagatggaagaggttgcacagggaaggatttggaccggtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctattg 126  Q
    |||||||||||  |||| |||||||| ||  ||||||| ||||| || |||| ||| |||||||||||||||||||||||||| || || || |||||||    
T  24357457 gacaagatggagaaggtagcacaggggagagtttggactggtaaagatgcagcatcacatggtttggttgatgctattggtggcctttcccgagctattg 24357556  T
Q  127 ctatagcaaaattgaaggccaatatacctcaa 158  Q
    | ||||||||||||||||||||||||||||||    
T  24357557 ccatagcaaaattgaaggccaatatacctcaa 24357588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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