View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_200 (Length: 276)
Name: NF20384_low_200
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_200 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 13909806 - 13910061
Alignment:
| Q |
1 |
atatattcaagacacacatactaggttgtccttgtgtgatgatatcaagtcctgaggcagctagagcagtgcttgttacacaagcacatctttttaaacc |
100 |
Q |
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| T |
13909806 |
atatattcaagacacacatactaggttgtccttgtgtgatgatatcaagtcctgaggcagctagagcagtgcttgttacacaagcacatctttttaaacc |
13909905 |
T |
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| Q |
101 |
aacataccctccaagcaaagagaagttgataggaccagaagctttgttctttcaacaaggtgcttatcactccatgctcaagaagctagttcaagcctct |
200 |
Q |
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| T |
13909906 |
aacataccctccaagcaaagagaagttgataggaccagaagctttgttctttcaacaaggtgcttatcactccatgctcaagaagctagttcaagcctct |
13910005 |
T |
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| Q |
201 |
tttttaccttccacacttaaaaactctgtctctcatgttgaccaaattgtacaaaa |
256 |
Q |
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| T |
13910006 |
tttttaccttccacacttaaaaactctgtctctcatgttgaccaaattgtacaaaa |
13910061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 45280947 - 45281065
Alignment:
| Q |
69 |
gtgcttgttacacaagcacatctttttaaaccaacataccctccaagcaaagagaagttgataggaccagaagctttgttctttcaaca---aggtgctt |
165 |
Q |
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| T |
45280947 |
gtgcttgtgacacatgcacatttgttcaagccaacatacccttcaagcagagagaagatgataggtccagaggctgttttctttcatcacctaggtgact |
45281046 |
T |
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| Q |
166 |
atcactccatgctcaagaa |
184 |
Q |
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| T |
45281047 |
atcactccatgctcaagaa |
45281065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 45287408 - 45287526
Alignment:
| Q |
69 |
gtgcttgttacacaagcacatctttttaaaccaacataccctccaagcaaagagaagttgataggaccagaagctttgttctttcaaca---aggtgctt |
165 |
Q |
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| T |
45287408 |
gtgcttgtgacacatgcacatttgttcaagccaacatacccttcaagcagagagaagatgataggtccagaggctgttttctttcatcacctaggtgact |
45287507 |
T |
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| Q |
166 |
atcactccatgctcaagaa |
184 |
Q |
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| T |
45287508 |
atcactccatgctcaagaa |
45287526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 33698350 - 33698405
Alignment:
| Q |
3 |
atattcaagacacacatactaggttgtccttgtgtgatgatatcaagtcctgaggc |
58 |
Q |
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||||| |||||||||||| |||| ||||| ||||||||| || ||||||||||||| |
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| T |
33698350 |
atatttaagacacacatattaggatgtccatgtgtgatgttaacaagtcctgaggc |
33698405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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