View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_209 (Length: 256)

Name: NF20384_low_209
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_209
NF20384_low_209
[»] chr3 (23 HSPs)
chr3 (12-237)||(9377085-9377310)
chr3 (12-235)||(9352900-9353123)
chr3 (82-202)||(9613844-9613964)
chr3 (22-114)||(9340680-9340772)
chr3 (22-114)||(9347996-9348088)
chr3 (22-114)||(9369650-9369742)
chr3 (22-76)||(9494861-9494915)
chr3 (12-121)||(9343844-9343953)
chr3 (12-89)||(9613993-9614070)
chr3 (155-204)||(9646292-9646341)
chr3 (155-204)||(9655285-9655334)
chr3 (22-101)||(9617491-9617570)
chr3 (17-76)||(41985632-41985691)
chr3 (12-101)||(9655385-9655474)
chr3 (22-121)||(9336549-9336648)
chr3 (165-204)||(9397933-9397972)
chr3 (165-200)||(9416719-9416754)
chr3 (165-204)||(9441712-9441751)
chr3 (22-101)||(41980863-41980942)
chr3 (12-121)||(9448313-9448422)
chr3 (155-204)||(9626408-9626457)
chr3 (12-101)||(9646392-9646481)
chr3 (164-204)||(9425718-9425758)
[»] chr2 (1 HSPs)
chr2 (12-73)||(20694357-20694418)
[»] chr1 (2 HSPs)
chr1 (12-70)||(4439859-4439917)
chr1 (22-76)||(18991213-18991267)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 9377085 - 9377310
Alignment:
Q  12 cacagatccaaagcagaagcagaaaacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttcctgttctcat 111  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9377085 cacagatcccaagcagaagcaggaaacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttcctgttctcat 9377184  T
Q  112 caagcttaaaaatcttcatactgaattgaaaaaatgtctgatgaatgtccagcaacaacaactcaccctcactctccaccagcaattttctattcttacc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9377185 caagcttaaaaatcttcatactgaattgaaaaaatgtctgatgaatgtccagtaacaacaactcaccctcactctccaccagcaattttctattcttacc 9377284  T
Q  212 acgaacacaacgttgatacaaaggat 237  Q
    ||||||||||||||||||||||||||    
T  9377285 acgaacacaacgttgatacaaaggat 9377310  T

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Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 9352900 - 9353123
Alignment:
Q  12 cacagatccaaagcagaagcagaaaacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttcctgttctcat 111  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||| |||||||||||    ||||||    
T  9352900 cacagatcccaaccagaagcagaaaacgaacatccactccccacaaacaaaaccctaccccctaattttttcaacttcacccacttcttctccatctcat 9352999  T
Q  112 caagcttaaaaatcttcatactgaattgaaaaaatgtctgatgaatgtccagcaacaacaactcaccctcactctccaccagcaattttctattcttacc 211  Q
    |||||||||| |  || |||||||||||||||||||| |||||||||||||  |||||||||||||||||| ||||||||||||||||||| |||| |||    
T  9353000 caagcttaaagaatttgatactgaattgaaaaaatgtttgatgaatgtccaataacaacaactcaccctcattctccaccagcaattttctgttctcacc 9353099  T
Q  212 acgaacacaacgttgatacaaagg 235  Q
    ||||||||||||| ||||||||||    
T  9353100 acgaacacaacgtcgatacaaagg 9353123  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 9613964 - 9613844
Alignment:
Q  82 tcaacttctcccacttcttcctgttctcatcaagcttaaaaatcttcatactgaattgaaaaaatgtctgatgaatgtccagcaacaacaactcaccctc 181  Q
    |||||||| |||||||||||   |||||||||||||||||||  |  || ||||||||| | ||||  |||| ||||||||  |||||||||||||||||    
T  9613964 tcaacttcacccacttcttctccttctcatcaagcttaaaaaaatcaattctgaattgatacaatgattgataaatgtccaataacaacaactcaccctc 9613865  T
Q  182 actctccaccagcaattttct 202  Q
     ||||||||||||| ||||||    
T  9613864 gctctccaccagcatttttct 9613844  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 9340680 - 9340772
Alignment:
Q  22 aagcagaagcagaaaacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttcctgttctcatcaa 114  Q
    ||||||||||||||||||||||||||| ||| |  || |||| ||||||||| || ||| |||||||| |||||||||||   ||||||||||    
T  9340680 aagcagaagcagaaaacgaacatccacgcccaatgaaaaaaaccctatccccgaaattcctcaacttcacccacttcttctccttctcatcaa 9340772  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 9347996 - 9348088
Alignment:
Q  22 aagcagaagcagaaaacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttcctgttctcatcaa 114  Q
    ||||||||||||||||||||||||||| ||| |  || |||||||||||||| || | | |||||||| |||||||||||   ||||||||||    
T  9347996 aagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctcaacttcacccacttcttctccttctcatcaa 9348088  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 9369650 - 9369742
Alignment:
Q  22 aagcagaagcagaaaacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttcctgttctcatcaa 114  Q
    ||||||||||||||||||||||||||| ||| |  || |||||||||||||| || | | |||||||| |||||||||||   ||||||||||    
T  9369650 aagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctcaacttcacccacttcttctccttctcatcaa 9369742  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 9494915 - 9494861
Alignment:
Q  22 aagcagaagcagaaaacgaacatccactccccacaaacaaaatcctatcccctaa 76  Q
    |||||||||||||||||||||||||| ||||||  ||||||| ||||||||||||    
T  9494915 aagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatcccctaa 9494861  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 9343844 - 9343953
Alignment:
Q  12 cacagatccaaagcagaagcagaaaacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttcctgttctcat 111  Q
    |||| |||| ||||||||||||||||||||||| || ||||||  |||||||  |||||||||||  |  | |||||| |||||||||||    ||||||    
T  9343844 cacaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcat 9343943  T
Q  112 caagcttaaa 121  Q
    ||||||||||    
T  9343944 caagcttaaa 9343953  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 9614070 - 9613993
Alignment:
Q  12 cacagatccaaagcagaagcagaaaacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttc 89  Q
    ||||||||  |||||||||||||||| ||||||||||||||||  || |||| | ||||||| || ||||||||||||    
T  9614070 cacagatctgaagcagaagcagaaaatgaacatccactccccaagaaaaaaaccatatccccaaaattcttcaacttc 9613993  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 9646341 - 9646292
Alignment:
Q  155 aatgtccagcaacaacaactcaccctcactctccaccagcaattttctat 204  Q
    |||||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  9646341 aatgtccaccaacaacaactcaccgtcactctccaccaacaattttctat 9646292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 9655334 - 9655285
Alignment:
Q  155 aatgtccagcaacaacaactcaccctcactctccaccagcaattttctat 204  Q
    |||||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  9655334 aatgtccaccaacaacaactcaccgtcactctccaccaacaattttctat 9655285  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 9617570 - 9617491
Alignment:
Q  22 aagcagaagcagaaaacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttc 101  Q
    |||||||||||||||| ||||||||| || | |  ||||||| |||||||||||| || ||||||||| |||| ||||||    
T  9617570 aagcagaagcagaaaatgaacatccattcacaaggaacaaaaccctatcccctaaatttttcaacttcacccatttcttc 9617491  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 41985632 - 41985691
Alignment:
Q  17 atccaaagcagaagcagaaaacgaacatccactccccacaaacaaaatcctatcccctaa 76  Q
    |||| |||||||||||||||||||||||||| ||||||  |||||||  |||||||||||    
T  41985632 atccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaa 41985691  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 9655474 - 9655385
Alignment:
Q  12 cacagatccaaagcagaagcagaaaacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttc 101  Q
    |||| |||| |||| || |||||||||||||||||    |||| |||||||| |||||||||||| ||| |||||||| |||| ||||||    
T  9655474 cacaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttc 9655385  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 9336549 - 9336648
Alignment:
Q  22 aagcagaagcagaaaacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttcctgttctcatcaagcttaaa 121  Q
    |||||||||||||||||||||||||| ||||||  ||||||| | |||| ||||| ||| ||| |||  ||||| | |||   |||||||||||| ||||    
T  9336549 aagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaa 9336648  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 9397933 - 9397972
Alignment:
Q  165 aacaacaactcaccctcactctccaccagcaattttctat 204  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  9397933 aacaacaactcactctcactctccaccagtaattttctat 9397972  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 200
Target Start/End: Original strand, 9416719 - 9416754
Alignment:
Q  165 aacaacaactcaccctcactctccaccagcaatttt 200  Q
    ||||||||||||||||||||||||||||| ||||||    
T  9416719 aacaacaactcaccctcactctccaccagtaatttt 9416754  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 9441751 - 9441712
Alignment:
Q  165 aacaacaactcaccctcactctccaccagcaattttctat 204  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  9441751 aacaacaactcgccctcactctccaccagtaattttctat 9441712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 41980863 - 41980942
Alignment:
Q  22 aagcagaagcagaaaacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttc 101  Q
    ||||||||||| |||||||||||||| ||||||  |||||||  |||||||||||  || |||||||  |||| ||||||    
T  41980863 aagcagaagcaaaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttcttc 41980942  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 9448313 - 9448422
Alignment:
Q  12 cacagatccaaagcagaagcagaaaacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttcctgttctcat 111  Q
    |||| |||| ||||||||||||||||||||||  || ||||||  |||||||  |||||||||||  |  | |||||| |||| ||||||   |||||||    
T  9448313 cacaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcat 9448412  T
Q  112 caagcttaaa 121  Q
     |||||||||    
T  9448413 aaagcttaaa 9448422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 9626457 - 9626408
Alignment:
Q  155 aatgtccagcaacaacaactcaccctcactctccaccagcaattttctat 204  Q
    ||||||||  |||||||||||||| ||||||||||||| || ||||||||    
T  9626457 aatgtccactaacaacaactcaccgtcactctccaccaacagttttctat 9626408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 9646481 - 9646392
Alignment:
Q  12 cacagatccaaagcagaagcagaaaacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttc 101  Q
    |||| |||| |||| || |||||||||||||||||    || | |||||||| |||||||||||| ||| |||||||| |||| ||||||    
T  9646481 cacaaatccgaagctgatgcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttc 9646392  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 9425718 - 9425758
Alignment:
Q  164 caacaacaactcaccctcactctccaccagcaattttctat 204  Q
    |||||||||  ||||||||||||||||||| ||||||||||    
T  9425718 caacaacaaggcaccctcactctccaccagtaattttctat 9425758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 20694418 - 20694357
Alignment:
Q  12 cacagatccaaagcagaagcagaaaacgaacatccactccccacaaacaaaatcctatcccc 73  Q
    |||| |||| |||||||||||||||||||||||||| |||||| |||||||| |||||||||    
T  20694418 cacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatcccc 20694357  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 4439859 - 4439917
Alignment:
Q  12 cacagatccaaagcagaagcagaaaacgaacatccactccccacaaacaaaatcctatc 70  Q
    |||| |||| |||||||||||||||||||||||||| |||||| |||||||| ||||||    
T  4439859 cacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatc 4439917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 18991213 - 18991267
Alignment:
Q  22 aagcagaagcagaaaacgaacatccactccccacaaacaaaatcctatcccctaa 76  Q
    |||||||||||||||||||||||||| ||||||  ||||||| ||||| ||||||    
T  18991213 aagcagaagcagaaaacgaacatccattccccaagaacaaaaccctattccctaa 18991267  T

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