View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_210 (Length: 255)
Name: NF20384_low_210
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_210 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 12153428 - 12153274
Alignment:
| Q |
17 |
aaaattcttagctttcaatttagaacaatttcataaacaaaaactttgaatccacaaaattgattaacatcaacgtcttcaatgtnnnnnnnnntttgaa |
116 |
Q |
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| T |
12153428 |
aaaattcttagctttcaatttagaacaatttcataaacaaaaactttgaatccacaaa----attaacatcaacgtcttcaatgtaaaaaaaaatttgaa |
12153333 |
T |
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| Q |
117 |
cccagagaattaggatcatcctattcaatctaataaaccattgaaatacttccaaatac |
175 |
Q |
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| T |
12153332 |
cccagagatttaggatcatcctattcaatctaataaaccattgaaatacttccaaatac |
12153274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 12153087 - 12153017
Alignment:
| Q |
167 |
tccaaatacatagcacaaattaaaaaattt-cacaatctcctacaatacacatactcctcatacatctcct |
236 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||| |
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| T |
12153087 |
tccaaatacatagcacaaattaaaaaattttcacaatctcctacaatacaaatactcctcatccatctcct |
12153017 |
T |
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