View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_212 (Length: 254)

Name: NF20384_low_212
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_212
NF20384_low_212
[»] chr8 (2 HSPs)
chr8 (73-205)||(2371828-2371961)
chr8 (18-75)||(2371749-2371806)
[»] chr3 (5 HSPs)
chr3 (148-204)||(13446953-13447009)
chr3 (148-204)||(13445784-13445841)
chr3 (73-138)||(13446856-13446921)
chr3 (73-139)||(13445871-13445937)
chr3 (22-75)||(13445959-13446012)


Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 2371828 - 2371961
Alignment:
Q  73 tatagattaatataaatatgcataaatcaacatatttacacacaagccatccagatacattgtaccc-nnnnnnnntatcggattctcaaaatttaataa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||         ||||||||||||||||||||||||    
T  2371828 tatagattaatataaatatgcataaatcaacatatttacacacaaaccatccagatacattgtacccaaaaaaaaatatcggattctcaaaatttaataa 2371927  T
Q  172 tttctttaaactaaaaagttaccctcctattagc 205  Q
    ||||||||||||||||||||||||||||||||||    
T  2371928 tttctttaaactaaaaagttaccctcctattagc 2371961  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 2371749 - 2371806
Alignment:
Q  18 acaatagcccttctatttctctgaaccattgtttaaattctgctacacaagtgtctat 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2371749 acaatagcccttctatttctctgaaccattgtttaaattctgctacacaagtgtctat 2371806  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 13446953 - 13447009
Alignment:
Q  148 tatcggattctcaaaatttaataatttctttaaactaaaaagttaccctcctattag 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13446953 tatcggattctcaaaatttaataatttctttaaactaaaaagttaccttcctattag 13447009  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 13445841 - 13445784
Alignment:
Q  148 tatcggattctcaaaatttaataatttctttaaac-taaaaagttaccctcctattag 204  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  13445841 tatcagattctcaaaatttaataatttctttaaacttaaaaagttaccttcctattag 13445784  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 13446856 - 13446921
Alignment:
Q  73 tatagattaatataaatatgcataaatcaacatatttacacacaagccatccagatacattgtacc 138  Q
    ||||||| | ||||| |||||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  13446856 tatagatgagtataattatgcataaatcaacatatttacacataagccgtccaaatacattgtacc 13446921  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 13445937 - 13445871
Alignment:
Q  73 tatagattaatataaatatgcataaatcaacatatttacacacaagccatccagatacattgtaccc 139  Q
    ||||||| | ||||| |||||||||||||||||||||||||| ||||  |||| | |||||||||||    
T  13445937 tatagatgagtataattatgcataaatcaacatatttacacataagcagtccaaacacattgtaccc 13445871  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 13446012 - 13445959
Alignment:
Q  22 tagcccttctatttctctgaaccattgtttaaattctgctacacaagtgtctat 75  Q
    |||||||| ||||||||||| ||||||||||||||  | |||||||||||||||    
T  13446012 tagcccttgtatttctctgatccattgtttaaatttggatacacaagtgtctat 13445959  T

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