View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_213 (Length: 254)
Name: NF20384_low_213
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_213 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 8202199 - 8201976
Alignment:
| Q |
14 |
tagcaaaggtaaagtttttgccattaaatttgcttgcatgtttattaaatagcttttcctgttgaggttttgagcaattgtactgttcattctcttgcag |
113 |
Q |
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| T |
8202199 |
tagcaaaggtaaagtttttgccattaaatttgcttgcatgtttattaaatagcttttcctgttgaggttttgagcaattgtactgttcattctcttgcag |
8202100 |
T |
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| Q |
114 |
ttggttggcatgcgacctcttgagaggtcactggagaaacttgatgatgttagaaagaaaaagctttcagaaatgatttcaggttctgaagatgctgtgc |
213 |
Q |
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| T |
8202099 |
ttggttggcatgcgacctcttgagaggtcactggagaaacttgatgatgttagaaagaaaaagctttcagaaatgatttcaggttctgaagatgctgtgc |
8202000 |
T |
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| Q |
214 |
ctggtggttcttctacaggtttgt |
237 |
Q |
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|||||||||||||||||||||||| |
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| T |
8201999 |
ctggtggttcttctacaggtttgt |
8201976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 42359188 - 42358979
Alignment:
| Q |
28 |
tttttgccattaaatttgcttgcatgtttattaaatagcttttcctgttgaggttttgagcaattgtactgttcattctcttgcagttggttggcatgcg |
127 |
Q |
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| T |
42359188 |
ttttttccattaaatttgcatgcatgtttattagattgcttttgctattgaggttttgagcaattgtaatcttcattcttctgcagtcggttggcatgag |
42359089 |
T |
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| Q |
128 |
acctcttgagaggtcactggagaaacttgatgatgttagaaagaaaaagctttcagaaatgatttcaggttctgaagatgctgtgcctggtggttcttct |
227 |
Q |
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| T |
42359088 |
acctctagagaggtcactggagaaacttgatgatgttagaaggaaaaagctttcagaaatgatttcaggttctgaagatgctgtgcccggtggttcttct |
42358989 |
T |
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| Q |
228 |
acaggtttgt |
237 |
Q |
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| T |
42358988 |
acaggtttgt |
42358979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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