View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_216 (Length: 253)
Name: NF20384_low_216
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_216 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 59 - 253
Target Start/End: Complemental strand, 52004518 - 52004324
Alignment:
| Q |
59 |
aaaccaattttatgcaaatgaatctaaacataaatcattgtacattcagtcaccttttcatcaaaatcaattttacaaagtgcatcaaatgaattttaat |
158 |
Q |
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| T |
52004518 |
aaaccaattttatgcaaatgaatctaaacataaatcattgtacattcagtcaccttttcatcaaaatcaattttacaaagtgcaccaaatgaattttaat |
52004419 |
T |
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| Q |
159 |
tatattttttggtgtcaactctctgatttcctgaagaagaggcccttgataatttggagttctaacaagaggtaagtaaagtttgaccaaatatt |
253 |
Q |
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| T |
52004418 |
tatattttttggtgttaactctctgatttcctgtagaagaggcccttggtaatttggagttctaacaagaggtaagtaaagtttgaccaaatatt |
52004324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 39634402 - 39634363
Alignment:
| Q |
210 |
atttggagttctaacaagaggtaagtaaagtttgaccaaa |
249 |
Q |
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| T |
39634402 |
atttggagttcgaccaagaggtaagtaaagtttgaccaaa |
39634363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 52004573 - 52004537
Alignment:
| Q |
1 |
acttgaatgtttttttgtgagaatttatctacacacaa |
38 |
Q |
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| T |
52004573 |
acttgaatgtttttt-gtgagaatttatctacacacaa |
52004537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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