View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_218 (Length: 252)
Name: NF20384_low_218
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_218 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 7293765 - 7293988
Alignment:
| Q |
11 |
agatgaactaaaggaggataatgacacttatttagctgtttcaaattttacattaggatttgatgagaataagtctaagagcaaggtttccggaatttca |
110 |
Q |
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| T |
7293765 |
agatgaactaaaggaggataatgacacttatttagctgtttcaaattttacattaggatttgatgagaataagtctaagagcaaggtttccggaatttca |
7293864 |
T |
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| Q |
111 |
aatagctttctaaaaaatgtgcaggacggtcagggtacaatggttgttaaaaagaatttggttgttagtggagtgggtgcaacacaacaaaattacagat |
210 |
Q |
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| T |
7293865 |
aatagctttctaaaaaatgtgcaggacggccagggtacaatggttgttaaaaagaatttggttgttagtggagtgggtgcaacacaacaaaattacagat |
7293964 |
T |
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| Q |
211 |
ataaaagcaatgaacattgctact |
234 |
Q |
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|||||||||||||||||||||||| |
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| T |
7293965 |
ataaaagcaatgaacattgctact |
7293988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 27 - 234
Target Start/End: Original strand, 7290035 - 7290242
Alignment:
| Q |
27 |
gataatgacacttatttagctgtttcaaattttacattaggatttgatgagaataagtctaagagcaaggtttccggaatttcaaatagctttctaaaaa |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| |
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| T |
7290035 |
gataatgacacttatttagctgtttcaaattttacattaggattttatgagaataagtctaagagcgaggattctggaatttcaaatagctttctaaaaa |
7290134 |
T |
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| Q |
127 |
atgtgcaggacggtcagggtacaatggttgttaaaaagaatttggttgttagtggagtgggtgcaacacaacaaaattacagatataaaagcaatgaaca |
226 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| |||||| |||| |
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| T |
7290135 |
atgtgcaggacggccagggtacaatggttgttaaaaagaatttggttgttagtggagtgggggaaacacaacaagattacagatatacaagcaacgaact |
7290234 |
T |
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| Q |
227 |
ttgctact |
234 |
Q |
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|||||||| |
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| T |
7290235 |
ttgctact |
7290242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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