View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_226 (Length: 250)
Name: NF20384_low_226
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_226 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 18735486 - 18735703
Alignment:
| Q |
21 |
caacccgatttctgaaaacaagtccttacataacctgttttctcctaaatcactatcagtttgaaccgtcacatcagatagagcaggagacggcaacaat |
120 |
Q |
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| T |
18735486 |
caacccggtttctgaaaacaagtccttacacaacccgttttctcctaaatcactatcggtttgaaccgtcacatcagatagagcaggagacgacaacaat |
18735585 |
T |
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| Q |
121 |
gttgttgtcgtcccctccaatgaagatggtgtttcaaactgagtataacatgttgaaacaccatccataggcaggaatgtcgttccctgtgaccaagacg |
220 |
Q |
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| T |
18735586 |
gttgttgtcgtcccctccaataaagatggtgtttcaacctgagtataacatgttgaaacaccatccattggcaggaatgtcgttccctgtgaccaagacg |
18735685 |
T |
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| Q |
221 |
gtgtttcgattgtagaat |
238 |
Q |
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| T |
18735686 |
gtgtttcgatcgtagaat |
18735703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 18730336 - 18730381
Alignment:
| Q |
114 |
caacaatgttgttgtcgtcccctccaatgaagatggtgtttcaaac |
159 |
Q |
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| T |
18730336 |
caacaatgttgttgtcgtcccctccgatgatgacggtgtttcaaac |
18730381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 18733106 - 18733158
Alignment:
| Q |
114 |
caacaatgttgttgtcgtcccctccaatgaagatggtgtttcaaactgagtat |
166 |
Q |
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| T |
18733106 |
caacaatgttgttgcagtcccctccgatgatgacggtgtttcaaacggagtat |
18733158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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