View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_23 (Length: 602)
Name: NF20384_low_23
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 6 - 587
Target Start/End: Complemental strand, 51529747 - 51529155
Alignment:
| Q |
6 |
agtagcaaaggagcaagcaagtgcaatgtttcccaaagcagtcaaaactttccaaattttgtcatcttctgacaatcttcctggtcctactttggttcca |
105 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51529747 |
agtagcataagagcaagcaagtgcaatgtttcccaaagcagtcaaaactttccaaattttgtcatcttctgacaatc---ctggtcctactttggttcca |
51529651 |
T |
|
| Q |
106 |
aacaaactggttgtttctcctttccctgttcacagccaaaaatgccttagtaatgttggtcacatcatttttcagt--------------gacaagcttt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51529650 |
aacaaactggttgtttctcctttccctgttcacagccaaaaatgccttagtaatgttggtcacatcatttttcagttttttgtagtcactgacaagcttt |
51529551 |
T |
|
| Q |
192 |
tggtggaatatacagtatgttgttaatattttgttggaaagatatagatgatgaaggttatacctgacaccacaactgctagagagagtccacttccaat |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51529550 |
tggtggaatatacagtatgttgttaatattttgttggaaagatatagatgatgaaggttatacctgacaccacaactgctagagagagtccacttccaat |
51529451 |
T |
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| Q |
292 |
taatgcataaccaaaagaggtaatagcagcaacagttgatatcaatgttaacttatggaaatttgggatttgagacaataaaatctgaaagatcccaaaa |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51529450 |
taatgcataaccaaaagaggtaatagcagcaacagttgatatcaatgttaacttatggaaatttgggatttgagacaataaaatctgaaagatcccaaaa |
51529351 |
T |
|
| Q |
392 |
ccgagcatgtagggattatttgaaaacttgcaataagcttcatggccatttttgtggaagcaaatcaatttctttatagccctgccacatttatacatta |
491 |
Q |
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| T |
51529350 |
ccgagcatgtagggattatttgaaaacttgcaataagcttcatggccatttttgtggaagcaaatcaatttctttatagccctgccacatttatacatta |
51529251 |
T |
|
| Q |
492 |
acaataccataaattagtgagtatgattttgtttcttaaatattaagatgttataacaatagttactgaatgcatcaaaattacaaaaacatatat |
587 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
51529250 |
acaataccataaattagtgagtatgattttgtttcttaaatattaagatgttataacaatagttattgaatgcatcaaaattacaaaaacatatat |
51529155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 288 - 410
Target Start/End: Original strand, 12030401 - 12030523
Alignment:
| Q |
288 |
caattaatgcataaccaaaagaggtaatagcagcaacagttgatatcaatgttaacttatggaaatttgggatttgagacaataaaatctgaaagatccc |
387 |
Q |
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|||| ||| |||||||||| |||||||| |||||||| ||||| ||| |||| || | ||| || ||||| ||||||||||| |||||||| || |||| |
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| T |
12030401 |
caatgaatacataaccaaacgaggtaattgcagcaacggttgaaatccatgtcaattcatgaaagtttggaatttgagacaagaaaatctgcaatgtccc |
12030500 |
T |
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| Q |
388 |
aaaaccgagcatgtagggattat |
410 |
Q |
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||||| | |||||||||||||| |
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| T |
12030501 |
aaaactaatcatgtagggattat |
12030523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 288 - 410
Target Start/End: Original strand, 222600 - 222722
Alignment:
| Q |
288 |
caattaatgcataaccaaaagaggtaatagcagcaacagttgatatcaatgttaacttatggaaatttgggatttgagacaataaaatctgaaagatccc |
387 |
Q |
| |
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|||| ||| |||||||||| ||||| ||||| |||| ||||||||| |||| | || || || || || ||||||||||| |||||||| || ||||| |
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| T |
222600 |
caatgaatacataaccaaacgaggtgatagcggcaatggttgatatccatgtcagtttgtgaaagttgggaatttgagacaagaaaatctgcaatatccc |
222699 |
T |
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| Q |
388 |
aaaaccgagcatgtagggattat |
410 |
Q |
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|||||||| ||| |||||||||| |
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| T |
222700 |
aaaaccgatcatatagggattat |
222722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 288 - 409
Target Start/End: Complemental strand, 242792 - 242671
Alignment:
| Q |
288 |
caattaatgcataaccaaaagaggtaatagcagcaacagttgatatcaatgttaacttatggaaatttgggatttgagacaataaaatctgaaagatccc |
387 |
Q |
| |
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|||| ||| |||||||||| ||||| ||||| |||| ||||| ||| |||| | || || || || || ||||||||||| |||||||| || ||||| |
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| T |
242792 |
caatgaatacataaccaaacgaggtgatagcggcaatggttgagatccatgtcagtttgtgaaagttgggaatttgagacaagaaaatctgcaatatccc |
242693 |
T |
|
| Q |
388 |
aaaaccgagcatgtagggatta |
409 |
Q |
| |
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|||||||| ||||||||||||| |
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| T |
242692 |
aaaaccgatcatgtagggatta |
242671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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