View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_231 (Length: 249)
Name: NF20384_low_231
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_231 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 11148382 - 11148595
Alignment:
| Q |
1 |
atcctcgtatgcttggtagtcttgtcaggcttcactttcatgactgttttgttcaagtatgtatactctctagtttttgcatattcaatcattcactaac |
100 |
Q |
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| T |
11148382 |
atcctcgtatgcttggtagtcttgtcaggcttcactttcatgactgttttgttcaagtatgtata---------------atattcaatcattcactaac |
11148466 |
T |
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| Q |
101 |
tacattttctattttgctcattgtgtatgacgtgctataaattcttgacatcttagtatacctataatcttatagtagtatgatcttcccatttaagtag |
200 |
Q |
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| T |
11148467 |
tacatgttctattttgctcattgcgtatgacatgctataaattcttgaaatcttagtatacctataatcctatagtagtatgatcttcccatttaagtag |
11148566 |
T |
|
| Q |
201 |
aattagtacatagtaagatataatataaa |
229 |
Q |
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| T |
11148567 |
aattagtacatagtaagatataatataaa |
11148595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 11145105 - 11145168
Alignment:
| Q |
4 |
ctcgtatgcttggtagtcttgtcaggcttcactttcatgactgttttgttcaagtatgtatact |
67 |
Q |
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| T |
11145105 |
ctcgtatgcttgcaagtcttgttaggcttcacttccatgactgttttgttcaagtatgtatact |
11145168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11135785 - 11135838
Alignment:
| Q |
1 |
atcctcgtatgcttggtagtcttgtcaggcttcactttcatgactgttttgttc |
54 |
Q |
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| T |
11135785 |
atcctcgcatgcttgctagtctcgtcagacttcactttcatgactgttttgttc |
11135838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 11198290 - 11198345
Alignment:
| Q |
4 |
ctcgtatgcttggtagtcttgtcaggcttcactttcatgactgttttgttcaagta |
59 |
Q |
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| T |
11198290 |
ctcgtatttttgctagtcttgttaggcttcactttcatgattgttttgttcaagta |
11198345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 11176981 - 11177034
Alignment:
| Q |
9 |
atgcttggtagtcttgtcaggcttcactttcatgactgttttgttcaagtatgt |
62 |
Q |
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|||||||||||||| | ||||| || ||||||||||||||||||||||||||| |
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| T |
11176981 |
atgcttggtagtctcattaggctacattttcatgactgttttgttcaagtatgt |
11177034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 11154853 - 11154897
Alignment:
| Q |
9 |
atgcttggtagtcttgtcaggcttcactttcatgactgttttgtt |
53 |
Q |
| |
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||||||| ||| || |||||||||||||||||||||||||||||| |
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| T |
11154853 |
atgcttgctagcctcgtcaggcttcactttcatgactgttttgtt |
11154897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 11117917 - 11117956
Alignment:
| Q |
27 |
aggcttcactttcatgactgttttgttcaagtatgtatac |
66 |
Q |
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| T |
11117917 |
aggcttcactttcatgattgtttcgttcaagtatgtatac |
11117956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 11192315 - 11192278
Alignment:
| Q |
27 |
aggcttcactttcatgactgttttgttcaagtatgtat |
64 |
Q |
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|||||||| |||||||| |||||||||||||||||||| |
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| T |
11192315 |
aggcttcattttcatgattgttttgttcaagtatgtat |
11192278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 10794319 - 10794279
Alignment:
| Q |
25 |
tcaggcttcactttcatgactgttttgttcaagtatgtata |
65 |
Q |
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||||||||||||||||||| ||||| ||||||||| ||||| |
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| T |
10794319 |
tcaggcttcactttcatgattgtttcgttcaagtaagtata |
10794279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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