View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20384_low_233 (Length: 248)
Name: NF20384_low_233
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_233 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 51651960 - 51652200
Alignment:
| Q |
1 |
agactaagtaccccgaatccgacatttactggaaaaaattcgaagagaagtatcacttctcctgccaatttaccgctgatcttttcgcaatgaaccacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51651960 |
agactaagtaccccgaatccgacatttactggaaaaaattcgaagagaagtatcacttctcctgccaatttaccgctgatcttttcgcaatgaaccacac |
51652059 |
T |
|
| Q |
101 |
agatttcatcatcactagtaccttccaagagattgctggaaggtgtgatatcccttcattcattgttcacaaagtctgttccttttttcgtaatttttat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
51652060 |
agatttcatcatcactagtaccttccaagagattgctggaaggtgtgatatcccttcattcattgttcacaaagtctgttccttttttcgtaattttcat |
51652159 |
T |
|
| Q |
201 |
ttctttgattaacagactcactaaaattgttgtatattctt |
241 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
51652160 |
ttctttgattaacagactcattaaaattgttgtattttctt |
51652200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 19153901 - 19153782
Alignment:
| Q |
25 |
tttactggaaaaaattcgaagagaagtatcacttctcctgccaatttaccgctgatcttttcgcaatgaaccacacagatttcatcatcactagtacctt |
124 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
19153901 |
tttactggaaaaaatttgaagacaagtatcacttctcatgccaatttaccgctgatctttttgcaatgaaccacacagattttattatcacaagtacctt |
19153802 |
T |
|
| Q |
125 |
ccaagagattgctggaaggt |
144 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
19153801 |
ccaagagattgctggaaggt |
19153782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 28776882 - 28776984
Alignment:
| Q |
42 |
gaagagaagtatcacttctcctgccaatttaccgctgatcttttcgcaatgaaccacacagatttcatcatcactagtaccttccaagagattgctggaa |
141 |
Q |
| |
|
||||| ||||||||||| || ||||||| || |||||||| |||||||||| | | ||||||||||| |||||||| | |||||| |||||||||| |
|
|
| T |
28776882 |
gaagaaaagtatcacttttcaagccaattcacagctgatctaatcgcaatgaattccgccgatttcatcataactagtacttaccaagaaattgctggaa |
28776981 |
T |
|
| Q |
142 |
ggt |
144 |
Q |
| |
|
||| |
|
|
| T |
28776982 |
ggt |
28776984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 28798586 - 28798688
Alignment:
| Q |
42 |
gaagagaagtatcacttctcctgccaatttaccgctgatcttttcgcaatgaaccacacagatttcatcatcactagtaccttccaagagattgctggaa |
141 |
Q |
| |
|
||||| ||||||||||| || ||||||| || |||||||| |||||||||| | | ||||||||||| |||||||| | |||||| |||||||||| |
|
|
| T |
28798586 |
gaagaaaagtatcacttttcaagccaattcacagctgatctaatcgcaatgaattccgccgatttcatcataactagtacttaccaagaaattgctggaa |
28798685 |
T |
|
| Q |
142 |
ggt |
144 |
Q |
| |
|
||| |
|
|
| T |
28798686 |
ggt |
28798688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University