View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_24 (Length: 590)

Name: NF20384_low_24
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_24
NF20384_low_24
[»] chr8 (20 HSPs)
chr8 (18-581)||(5718097-5718661)
chr8 (19-576)||(5685951-5686498)
chr8 (123-325)||(5656587-5656788)
chr8 (371-516)||(29414351-29414486)
chr8 (375-515)||(24068125-24068256)
chr8 (328-445)||(25124400-25124518)
chr8 (371-515)||(36947229-36947367)
chr8 (375-447)||(38585096-38585168)
chr8 (365-448)||(26415579-26415662)
chr8 (467-513)||(35393710-35393756)
chr8 (186-287)||(5638193-5638294)
chr8 (186-287)||(5651391-5651492)
chr8 (368-448)||(33543375-33543454)
chr8 (186-251)||(5602098-5602163)
chr8 (186-251)||(5602684-5602749)
chr8 (186-251)||(5602946-5603011)
chr8 (186-251)||(5632359-5632424)
chr8 (186-251)||(5638457-5638522)
chr8 (396-454)||(43063881-43063939)
chr8 (328-356)||(24068076-24068104)
[»] chr7 (12 HSPs)
chr7 (368-515)||(21882770-21882909)
chr7 (369-512)||(23730507-23730640)
chr7 (365-454)||(1985027-1985116)
chr7 (377-515)||(8123659-8123789)
chr7 (377-515)||(46297581-46297711)
chr7 (368-514)||(22631449-22631587)
chr7 (368-515)||(24250455-24250594)
chr7 (368-448)||(46413744-46413827)
chr7 (368-515)||(20125558-20125697)
chr7 (368-419)||(44601056-44601107)
chr7 (371-507)||(23611754-23611881)
chr7 (369-506)||(19511387-19511516)
[»] chr1 (16 HSPs)
chr1 (328-515)||(29657332-29657512)
chr1 (368-506)||(10061569-10061699)
chr1 (368-516)||(43537146-43537289)
chr1 (368-511)||(35412998-35413133)
chr1 (368-515)||(21540042-21540181)
chr1 (368-515)||(23906607-23906746)
chr1 (369-448)||(11470051-11470130)
chr1 (375-506)||(35149672-35149795)
chr1 (378-443)||(33077719-33077784)
chr1 (395-516)||(49313574-49313687)
chr1 (365-447)||(26469972-26470054)
chr1 (415-454)||(13085089-13085128)
chr1 (377-425)||(4684518-4684566)
chr1 (365-420)||(9113458-9113514)
chr1 (466-511)||(35360380-35360425)
chr1 (385-453)||(47996699-47996767)
[»] chr5 (12 HSPs)
chr5 (329-515)||(25493787-25493966)
chr5 (365-516)||(3040258-3040401)
chr5 (371-516)||(30735325-30735462)
chr5 (365-454)||(30700868-30700957)
chr5 (365-515)||(40519147-40519288)
chr5 (365-516)||(30071738-30071881)
chr5 (374-449)||(7547292-7547366)
chr5 (328-496)||(20359898-20360061)
chr5 (365-454)||(34280104-34280193)
chr5 (463-512)||(35875827-35875876)
chr5 (463-515)||(21259186-21259238)
chr5 (465-511)||(43590976-43591022)
[»] chr3 (12 HSPs)
chr3 (365-515)||(34905814-34905956)
chr3 (328-515)||(45852894-45853074)
chr3 (368-448)||(26442976-26443056)
chr3 (365-448)||(18271961-18272044)
chr3 (368-447)||(1632836-1632915)
chr3 (372-515)||(48897685-48897820)
chr3 (365-490)||(2671896-2672013)
chr3 (322-454)||(31192080-31192213)
chr3 (368-449)||(1713979-1714060)
chr3 (463-516)||(3169336-3169387)
chr3 (399-447)||(40840680-40840728)
chr3 (391-428)||(3169272-3169309)
[»] scaffold0122 (1 HSPs)
scaffold0122 (371-515)||(18602-18738)
[»] chr2 (18 HSPs)
chr2 (328-515)||(20142936-20143116)
chr2 (365-515)||(38320198-38320340)
chr2 (365-515)||(37714391-37714533)
chr2 (371-515)||(13716714-13716850)
chr2 (371-515)||(32976024-32976162)
chr2 (365-448)||(14131183-14131266)
chr2 (365-450)||(19945722-19945807)
chr2 (365-444)||(27007200-27007279)
chr2 (377-510)||(4434270-4434398)
chr2 (365-453)||(27407444-27407532)
chr2 (365-449)||(35457426-35457510)
chr2 (377-448)||(3167923-3167994)
chr2 (369-436)||(31845453-31845520)
chr2 (366-441)||(5881430-5881505)
chr2 (409-515)||(37899545-37899643)
chr2 (365-448)||(31645094-31645178)
chr2 (466-517)||(31845401-31845452)
chr2 (328-406)||(31264827-31264906)
[»] chr6 (8 HSPs)
chr6 (373-518)||(6784708-6784845)
chr6 (367-510)||(32871753-32871888)
chr6 (368-515)||(28867153-28867292)
chr6 (378-492)||(6519231-6519337)
chr6 (374-448)||(2130499-2130573)
chr6 (328-515)||(34713469-34713649)
chr6 (328-439)||(3855696-3855807)
chr6 (373-511)||(11301808-11301938)
[»] chr4 (15 HSPs)
chr4 (365-448)||(42504192-42504275)
chr4 (365-515)||(24060544-24060686)
chr4 (383-502)||(25817646-25817757)
chr4 (328-496)||(5288509-5288670)
chr4 (365-448)||(30220727-30220809)
chr4 (365-511)||(16528535-16528676)
chr4 (384-448)||(19482545-19482609)
chr4 (368-515)||(37762773-37762914)
chr4 (158-284)||(106808-106934)
chr4 (384-454)||(29065295-29065365)
chr4 (365-449)||(51304297-51304381)
chr4 (376-515)||(41545383-41545514)
chr4 (188-264)||(166955-167031)
chr4 (384-515)||(2765385-2765505)
chr4 (463-504)||(41485716-41485757)
[»] scaffold0194 (1 HSPs)
scaffold0194 (328-438)||(27069-27180)
[»] scaffold0013 (1 HSPs)
scaffold0013 (188-282)||(88573-88667)
[»] scaffold0018 (1 HSPs)
scaffold0018 (391-506)||(69949-70056)
[»] scaffold0247 (1 HSPs)
scaffold0247 (409-445)||(19220-19256)


Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Original strand, 5718097 - 5718661
Alignment:
Q  18 acaacatacatacatcatcgatcaattaataatcattagaaaataaacatgccatgtacgtaattttaaaatttggcaagacaaatgtttattataatga 117  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5718097 acaacatacacacatcattgatcaattaataatcattagaaaataaacatgccatgtacgtaattttaaaatttggcaagacaaatgtttattataatga 5718196  T
Q  118 taaagatggtttttcctttttgtgctcaagctcacatttcaaactgcaatggaaggcaacataatccctttacgatattcagctagagcccacattggga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5718197 taaagatggtttttcctttttgtgctcaagctcacatttcaaactgcaatggaaggcaacataatccctttacgatattcagctagagcccacattggga 5718296  T
Q  218 atatatctctaaacattgcgtaatgcagcatgcagtttttcatgaatactgctgtgagttcctgccaaaacataaataagaacttaattaaagatacaaa 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5718297 atatatctctaaacattgcgtaatgcagcatgcagtttttcatgaatactgctgtgagttcctgccaaaacataaatacgaacttaattaaagatacaaa 5718396  T
Q  318 aataataagagaaatgatagatacagtgacaaactgtatc-nnnnnnntttaagacagtgtatttgctaacacatttccttaattacacatcattacctc 416  Q
    ||||||||||||||||||||||||| ||||||||| ||||        |||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  5718397 aataataagagaaatgatagatacaatgacaaactatatcaagaaaattttaagacagtgtatttgctaacacatttccttaattacacaccattacctt 5718496  T
Q  417 ccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttcttgatcaattcttgataaaatctctcaagataaatagcaatgctca 516  Q
    |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5718497 ccttgatttccgacaaataataaatttaattgactaagagtctgagaccttttcttgatcaattcttgataaaatctctcaagataaataccaatgctca 5718596  T
Q  517 aataataaaccgaagtatatacaagtttattgtacaagttttattttatccttcaatattcttcg 581  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5718597 aataataaaccgaagtatatacaagtttattgtacaagttttattttatccttcaatatttttcg 5718661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 576
Target Start/End: Original strand, 5685951 - 5686498
Alignment:
Q  19 caacatacatacatcatcgatcaattaataatcattagaaaataaacatgccatgtacgtaattttaaaatttggcaagacaaatgtttattataatgat 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5685951 caacatacatacatcattgatcaattaataatcattagaaaataaacatgccatgtacgtaattttaaaatttggcaagacaaatgtttattataatgat 5686050  T
Q  119 aaagatggtttttcctttttgtgctcaagctcacatttcaaactgcaatggaaggcaacataatccctttacgatattcagctagagcccacattgggaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5686051 aaagatggtttttcctttttgtgctcaagctcacatttcaaactgcaatggaaggcaacataatccctttacgatattcagctagagcccacattgggaa 5686150  T
Q  219 tatatctctaaacattgcgtaatgcagcatgcagtttttcatgaatactgctgtgagttcctgccaaaacataaataagaacttaattaaagatacaaaa 318  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5686151 tatatctctaaacatggcgtaatgcagcatgcagtttttcatgaatactgctgtgagttcctgccaaaacataaataagaacttaattaaagatacaaaa 5686250  T
Q  319 ataataagagaaatgatagatacagtgacaaactgtatcnnnnnnnttt-aagacagtgtatttgctaacacatttccttaattacacatcattacctcc 417  Q
    |||||||||||||||||||||          ||| ||||       ||| |||| || ||||||||||||||||||| ||||||||| || |||||||||    
T  5686251 ataataagagaaatgatagat----------actctatcaagaaaatttcaagatagcgtatttgctaacacatttcattaattacatattattacctcc 5686340  T
Q  418 cttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttcttgatcaattcttgataaaatctctcaagataaatagcaatgctcaa 517  Q
    ||||||||||| |||||||||||||||||||| |||| || || ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  5686341 cttgatttccggcaaataacaaatttaattgattgagagtttgggaccttttcttgatcaattcttgat-aaatttctcaagataaatagcaatgctcaa 5686439  T
Q  518 ataataaaccgaagtatatacaagtttattgtacaagttttattttatccttcaatatt 576  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5686440 ataataaaccgaagtatatacaagtttattgtacaagttttattttatccttcaatatt 5686498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 123 - 325
Target Start/End: Original strand, 5656587 - 5656788
Alignment:
Q  123 atggtttttcctttttgtgctcaagctcacatttcaaactgcaatggaaggcaacataatccctttacgatattcagctagagcccacattgggaatata 222  Q
    |||| ||||||||||||||||||||||||||||| |||||| |  |||| |||| | ||| | | |||||||||||||||||||||||||||| ||||||    
T  5656587 atggcttttcctttttgtgctcaagctcacattttaaactgtagaggaaagcaatagaattcgtctacgatattcagctagagcccacattggaaatata 5656686  T
Q  223 tctctaaacattgcgtaatgcagcatgcagtttttcatgaatactgctgtgagttcctgccaaaacataaataagaacttaattaaagatacaaaaataa 322  Q
    |||||| |||| ||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5656687 tctctatacatagcgtaatgcagcatgcagtttttcatgaatactcccgtgagttcctgcc-aaacataaataagaacttaattaaagatacaaaaataa 5656785  T
Q  323 taa 325  Q
    |||    
T  5656786 taa 5656788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 371 - 516
Target Start/End: Complemental strand, 29414486 - 29414351
Alignment:
Q  371 acagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttc 470  Q
    |||||| ||||| |||||| |||||||||||| ||| |||||||| ||||||||| || ||||||||||||||||||        | ||||||| |||||    
T  29414486 acagtgcatttgttaacacctttccttaattaaacaccattaccttccttgattttcggcaaataacaaatttaatt--------ggctgagacattttc 29414395  T
Q  471 ttgatcaattcttgataaaatctctcaagataaatagcaatgctca 516  Q
    |||||||||| ||||||||| ||||  |||||||||||||||||||    
T  29414394 ttgatcaatttttgataaaaactct--agataaatagcaatgctca 29414351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 375 - 515
Target Start/End: Original strand, 24068125 - 24068256
Alignment:
Q  375 tgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttcttga 474  Q
    ||||||| ||||||  |||||||||||||||| ||| |||||| |||||||  | ||||||||||||||||||| |||||        || |||||| ||    
T  24068125 tgtatttcctaacatctttccttaattacacaccatcacctcctttgattttgg-caaataacaaatttaattggctgag--------actttttctcga 24068215  T
Q  475 tcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  24068216 tcaattcttgataaaatctctctagataaatagcaatgctc 24068256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 445
Target Start/End: Complemental strand, 25124518 - 25124400
Alignment:
Q  328 gaaatgatagatacagtgacaaactgtatcnnnnnnnttt-aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttc 426  Q
    ||||||||||||||||||||||| | ||||       ||| ||||||||||||||| ||| || ||| |||||||||||||||||| ||| |||||||||    
T  25124518 gaaatgatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgttaataccttttcttaattacacatcattatctctcttgatttc 25124419  T
Q  427 cgacaaataacaaatttaa 445  Q
    || |||||||||| |||||    
T  25124418 cgccaaataacaactttaa 25124400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 36947229 - 36947367
Alignment:
Q  371 acagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttc 470  Q
    |||||||||||  ||||||||||| ||||||| ||||||||||||||||| ||||  | | |||||||||||||||||| |||       | |  ||||     
T  36947229 acagtgtatttattaacacatttctttaattatacatcattacctcccttcatttttggccaataacaaatttaattgattga------tacattttttt 36947322  T
Q  471 ttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    || ||||||||||||||||||||||| ||||||||| ||||||||    
T  36947323 tttatcaattcttgataaaatctctctagataaataacaatgctc 36947367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 447
Target Start/End: Original strand, 38585096 - 38585168
Alignment:
Q  375 tgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaatt 447  Q
    ||||||||||||||| |||| |||||||||||  ||||||||| |||||||||| ||||| ||||||||||||    
T  38585096 tgtatttgctaacacttttctttaattacacacaattacctcctttgatttccgccaaatgacaaatttaatt 38585168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 365 - 448
Target Start/End: Complemental strand, 26415662 - 26415579
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattg 448  Q
    ||||||| ||| |||||||||| || |||||||||||||||||||||| |||  || ||||||| ||||||| |||||||||||    
T  26415662 tttaagatagtatatttgctaatacctttccttaattacacatcattatctcttttaatttccgtcaaataataaatttaattg 26415579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 467 - 513
Target Start/End: Complemental strand, 35393756 - 35393710
Alignment:
Q  467 tttcttgatcaattcttgataaaatctctcaagataaatagcaatgc 513  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||    
T  35393756 tttcttgatcaattcttgataaaaactctctagataaatagcaatgc 35393710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 5638193 - 5638294
Alignment:
Q  186 tttacgatattcagctagagcccacattgggaatatatctctaaacattgcgtaatgcagcatgcagtttttcatgaatactgctgtgagttcctgccaa 285  Q
    |||||||||||||||||||||| ||||||| ||  |||||||| ||||||  ||||||| ||||||  |||||| | || |  |||| ||||||||||||    
T  5638193 tttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttcctgccaa 5638292  T
Q  286 aa 287  Q
    ||    
T  5638293 aa 5638294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 5651391 - 5651492
Alignment:
Q  186 tttacgatattcagctagagcccacattgggaatatatctctaaacattgcgtaatgcagcatgcagtttttcatgaatactgctgtgagttcctgccaa 285  Q
    |||||||||||||||||||||| ||||||| ||  |||||||| ||||||  ||||||| ||||||  |||||| | || |  |||| ||||||||||||    
T  5651391 tttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttcctgccaa 5651490  T
Q  286 aa 287  Q
    ||    
T  5651491 aa 5651492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 448
Target Start/End: Complemental strand, 33543454 - 33543375
Alignment:
Q  368 aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattg 448  Q
    |||||||| |||||| |||||| |||  ||||||||||| ||||| ||||||||||||| | |||||||||||||| ||||    
T  33543454 aagacagtatatttgttaacacctttttttaattacaca-cattatctcccttgatttcagccaaataacaaattttattg 33543375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 5602163 - 5602098
Alignment:
Q  186 tttacgatattcagctagagcccacattgggaatatatctctaaacattgcgtaatgcagcatgca 251  Q
    |||||||||||||||||||||| ||||||| ||  |||||||| ||||||  ||||||| ||||||    
T  5602163 tttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgca 5602098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 5602749 - 5602684
Alignment:
Q  186 tttacgatattcagctagagcccacattgggaatatatctctaaacattgcgtaatgcagcatgca 251  Q
    |||||||||||||||||||||| ||||||| ||  |||||||| ||||||  ||||||| ||||||    
T  5602749 tttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgca 5602684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 5603011 - 5602946
Alignment:
Q  186 tttacgatattcagctagagcccacattgggaatatatctctaaacattgcgtaatgcagcatgca 251  Q
    |||||||||||||||||||||| ||||||| ||  |||||||| ||||||  ||||||| ||||||    
T  5603011 tttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgca 5602946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 5632359 - 5632424
Alignment:
Q  186 tttacgatattcagctagagcccacattgggaatatatctctaaacattgcgtaatgcagcatgca 251  Q
    |||||||||||||||||||||| ||||||| ||  |||||||| ||||||  ||||||| ||||||    
T  5632359 tttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgca 5632424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 5638457 - 5638522
Alignment:
Q  186 tttacgatattcagctagagcccacattgggaatatatctctaaacattgcgtaatgcagcatgca 251  Q
    |||||||||||||||||||||| ||||||| ||  |||||||| ||||||  ||||||| ||||||    
T  5638457 tttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgca 5638522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 454
Target Start/End: Original strand, 43063881 - 43063939
Alignment:
Q  396 ttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgag 454  Q
    ||||||| ||||||||||||   ||||||| | |||||||| |||||||||||||||||    
T  43063881 ttaattatacatcattaccttatttgattttcaacaaataataaatttaattgactgag 43063939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 356
Target Start/End: Original strand, 24068076 - 24068104
Alignment:
Q  328 gaaatgatagatacagtgacaaactgtat 356  Q
    |||||||||||||||||||||||||||||    
T  24068076 gaaatgatagatacagtgacaaactgtat 24068104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 368 - 515
Target Start/End: Original strand, 21882770 - 21882909
Alignment:
Q  368 aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagacctt 467  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||        | |||||| |||    
T  21882770 aagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccggcaaataacaaatttaatt--------ggctgagatctt 21882861  T
Q  468 ttcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    ||||| |||||||||| |||||||||||| ||||||||||||||||||    
T  21882862 ttcttaatcaattcttcataaaatctctctagataaatagcaatgctc 21882909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 369 - 512
Target Start/End: Original strand, 23730507 - 23730640
Alignment:
Q  369 agacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttt 468  Q
    |||||||||||||| |||||| |||||||||||||||  ||||||||| |||||||||||||||||||| |||||||||   ||     |||| || |||    
T  23730507 agacagtgtatttgttaacacctttccttaattacac--cattacctctcttgatttccgacaaataacgaatttaatt---tg-----ctgaaacgttt 23730596  T
Q  469 tcttgatcaattcttgataaaatctctcaagataaatagcaatg 512  Q
    ||||||||||||||||||||||||||||  ||||||||||||||    
T  23730597 tcttgatcaattcttgataaaatctctctcgataaatagcaatg 23730640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 365 - 454
Target Start/End: Complemental strand, 1985116 - 1985027
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgag 454  Q
    ||||||| |||||||||||||||||||||||||||||||| | |||||||| |||||||||||| ||||||||||||||||||| |||||    
T  1985116 tttaagatagtgtatttgctaacacatttccttaattacataccattaccttccttgatttccggcaaataacaaatttaattggctgag 1985027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 377 - 515
Target Start/End: Complemental strand, 8123789 - 8123659
Alignment:
Q  377 tatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttcttgatc 476  Q
    ||||||||||||| |||| ||||||| |||| |||| |||| || |||||| ||||||||||||||||||||||||||        || |||||||||||    
T  8123789 tatttgctaacacctttctttaattatacattattatctccattaatttccaacaaataacaaatttaattgactgag--------acattttcttgatc 8123698  T
Q  477 aattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  8123697 aattcatgataaaatctctctagataaatagcaatgctc 8123659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 377 - 515
Target Start/End: Complemental strand, 46297711 - 46297581
Alignment:
Q  377 tatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttcttgatc 476  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| || |        | ||||||| ||||||||||     
T  46297711 tatttgctaacacatttccttaattacacaccattaactcccttgattttcgacaaataacaaattaaaat--------ggctgagacattttcttgata 46297620  T
Q  477 aattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    |||||||||||||| ||||| |||||||||| |||||||    
T  46297619 aattcttgataaaaactctctagataaatagtaatgctc 46297581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 368 - 514
Target Start/End: Complemental strand, 22631587 - 22631449
Alignment:
Q  368 aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagacctt 467  Q
    ||||| ||||||| |||||||| ||||||||||||||||  |||| |||| |||||||||||||||||||||||||||||        | |||||| |||    
T  22631587 aagacggtgtattagctaacacctttccttaattacacactattatctcctttgatttccgacaaataacaaatttaatt--------ggctgagatctt 22631496  T
Q  468 ttcttgatcaattcttgataaaatctctcaagataaatagcaatgct 514  Q
    |||||||||||||||| ||||||| |||  ||||||||| |||||||    
T  22631495 ttcttgatcaattcttaataaaatatctttagataaataacaatgct 22631449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 368 - 515
Target Start/End: Original strand, 24250455 - 24250594
Alignment:
Q  368 aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagacctt 467  Q
    ||||||| |||||| |||| |  ||| |||||||||| | ||||||||||||||||||||||||||||||||||| |||||   ||     | ||| |||    
T  24250455 aagacagcgtatttactaatatcttttcttaattacaaaccattacctcccttgatttccgacaaataacaaattaaattg---ga-----taagatctt 24250546  T
Q  468 ttcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  24250547 ttcttgatcaattcttgataaaatctctttagatagatagcaatgctc 24250594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 368 - 448
Target Start/End: Original strand, 46413744 - 46413827
Alignment:
Q  368 aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccg---acaaataacaaatttaattg 448  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  46413744 aagacagtgtatttgttaacacctttccttaattacacatcattacctcccttgatttccgccaccaaataacaaatttaattg 46413827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 368 - 515
Target Start/End: Complemental strand, 20125697 - 20125558
Alignment:
Q  368 aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagacctt 467  Q
    ||||||||||||||||||| || |||| ||||||||||| ||||| || | || ||||| ||||| ||||||||||||||        | |||| || ||    
T  20125697 aagacagtgtatttgctaatacctttctttaattacacaccattatcttctttaatttctgacaagtaacaaatttaatt--------ggctgacacatt 20125606  T
Q  468 ttcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    ||||||||||||||||||||||| ||||| |||||||||| |||||||    
T  20125605 ttcttgatcaattcttgataaaacctctctagataaatagaaatgctc 20125558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 368 - 419
Target Start/End: Complemental strand, 44601107 - 44601056
Alignment:
Q  368 aagacagtgtatttgctaacacatttccttaattacacatcattacctccct 419  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  44601107 aagacagtgtatttgctaacacattttcttaattacacatcattatctccct 44601056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 371 - 507
Target Start/End: Original strand, 23611754 - 23611881
Alignment:
Q  371 acagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttc 470  Q
    |||||||||||| |||||| ||| ||||||||||   ||||||||| ||||||||||| ||||||||||||||||||   ||      |||||| |||||    
T  23611754 acagtgtatttgttaacacctttacttaattacatc-cattacctctcttgatttccgtcaaataacaaatttaatt---tg-----ttgagacattttc 23611844  T
Q  471 ttgatcaattcttgataaaatctctcaagataaatag 507  Q
    ||||| ||||||| |||||| ||||| ||||||||||    
T  23611845 ttgataaattcttaataaaaactctctagataaatag 23611881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 369 - 506
Target Start/End: Complemental strand, 19511516 - 19511387
Alignment:
Q  369 agacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttt 468  Q
    |||||||||||||  |||||| ||||||||||||| ||  |||| |||| ||||||||| | |||||| ||||||||||        | || | || |||    
T  19511516 agacagtgtatttattaacacctttccttaattactcactattatctccattgatttccaaaaaataataaatttaatt--------ggctaaaactttt 19511425  T
Q  469 tcttgatcaattcttgataaaatctctcaagataaata 506  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  19511424 tcttaatcaattcttgataaaatctctcgagataaata 19511387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 328 - 515
Target Start/End: Complemental strand, 29657512 - 29657332
Alignment:
Q  328 gaaatgatagatacagtgacaaactgtatcnnnnnnnttt-aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttc 426  Q
    ||||||||||||||||||||||| | ||||       ||| |||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||     
T  29657512 gaaatgatagatacagtgacaaattttatcaagaaaatttcaagacagtgtatttgctaacacctttccttaattacatatcattacctcctttgatttt 29657413  T
Q  427 cgacaaataacaaatttaattgactgagggtctgagaccttttcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    || ||||||||||||||||||       ||| |||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||    
T  29657412 cggcaaataacaaatttaatt-------ggt-tgagaccttttcttgaccaatttttgataaaatctctctagataaataggaatgctc 29657332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 368 - 506
Target Start/End: Complemental strand, 10061699 - 10061569
Alignment:
Q  368 aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagacctt 467  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||       ||| |||||| ||    
T  10061699 aagacagtttatttgctaacacatttccttaattacacatcattacctcccttgatttctgtcaaataacaaatttaatt-------ggt-tgagacttt 10061608  T
Q  468 ttcttgatcaattcttgataaaatctctcaagataaata 506  Q
    || ||||| |||||||||||||| ||||| |||||||||    
T  10061607 tttttgataaattcttgataaaaactctctagataaata 10061569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 368 - 516
Target Start/End: Original strand, 43537146 - 43537289
Alignment:
Q  368 aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagacctt 467  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||        | ||||||||||    
T  43537146 aagacagtgtatttgttaacacatttctttaattacacaccattacctcccttgatttccggcaaataacaaatttaatt--------ggctgagacctt 43537237  T
Q  468 ttcttgatcaattcttgat---aaaatctctcaagataaatagcaatgctca 516  Q
    |||||||| ||||||||||   |||| ||||| ||||||||| |||||||||    
T  43537238 ttcttgattaattcttgataaaaaaaactctctagataaataacaatgctca 43537289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 368 - 511
Target Start/End: Complemental strand, 35413133 - 35412998
Alignment:
Q  368 aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagacctt 467  Q
    |||| |||||||||| |||||| ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||       ||| |||||||||    
T  35413133 aagagagtgtatttgttaacacctttccttaattacacactattacctcccttgatttccgtcaaataacaaatttaatt-------ggt-tgagacctt 35413042  T
Q  468 ttcttgatcaattcttgataaaatctctcaagataaatagcaat 511  Q
    |||||||| |||| ||||||||| ||||| ||||||||||||||    
T  35413041 ttcttgataaattattgataaaaactctctagataaatagcaat 35412998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 368 - 515
Target Start/End: Complemental strand, 21540181 - 21540042
Alignment:
Q  368 aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagacctt 467  Q
    ||||||||||||||| |||||| |||| |||||||||| |||||| ||||||| ||||||| ||||||||||||||||||        | ||||||| ||    
T  21540181 aagacagtgtatttgttaacacctttctttaattacacttcattatctcccttaatttccgccaaataacaaatttaatt--------ggctgagacatt 21540090  T
Q  468 ttcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    |||||||| | |||||||||||| ||||| | ||||||||||||||||    
T  21540089 ttcttgataatttcttgataaaaactctctaaataaatagcaatgctc 21540042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 368 - 515
Target Start/End: Original strand, 23906607 - 23906746
Alignment:
Q  368 aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagacctt 467  Q
    |||||| ||||||||||||||| |||| ||||||||||| ||||||||| ||||||||  | ||||||||||||||||||        | |||| || ||    
T  23906607 aagacaatgtatttgctaacacctttctttaattacacaccattacctctcttgatttgtggcaaataacaaatttaatt--------ggctgaaacttt 23906698  T
Q  468 ttcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    ||||||||||||||||||||||| || || ||||||||||||||||||    
T  23906699 ttcttgatcaattcttgataaaacctttctagataaatagcaatgctc 23906746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 369 - 448
Target Start/End: Complemental strand, 11470130 - 11470051
Alignment:
Q  369 agacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattg 448  Q
    ||||| |||||||  ||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11470130 agacaatgtatttcttaacatattttcttaattacacatcattacctcccttgatttccgccaaataacaaatttaattg 11470051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 506
Target Start/End: Original strand, 35149672 - 35149795
Alignment:
Q  375 tgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttcttga 474  Q
    ||||||||||||||| |||||||||||| ||||||||| ||||||||||||  | |||||||||||||||||||       || | |||  |||||||||    
T  35149672 tgtatttgctaacacctttccttaattatacatcattatctcccttgatttatgtcaaataacaaatttaattg-------gt-taagatattttcttga 35149763  T
Q  475 tcaattcttgataaaatctctcaagataaata 506  Q
    | |||||||||||||| ||||| |||||||||    
T  35149764 taaattcttgataaaaactctctagataaata 35149795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 443
Target Start/End: Complemental strand, 33077784 - 33077719
Alignment:
Q  378 atttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaattt 443  Q
    ||||||||||||||||  ||||||||||||||||||||| |||||||| || |||||| |||||||    
T  33077784 atttgctaacacatttatttaattacacatcattacctctcttgattttcggcaaatatcaaattt 33077719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 516
Target Start/End: Complemental strand, 49313687 - 49313574
Alignment:
Q  395 cttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttcttgatcaattcttgataaaatctc 494  Q
    |||||||| || |||||| || | |||||||||||| |||||||||||||||| | ||||        || ||||||||||||||||||||||||| |||    
T  49313687 cttaattaaacttcattatcttctttgatttccgactaataacaaatttaattaattgag--------acattttcttgatcaattcttgataaaaactc 49313596  T
Q  495 tcaagataaatagcaatgctca 516  Q
    |   ||||||||||||||||||    
T  49313595 tatggataaatagcaatgctca 49313574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 365 - 447
Target Start/End: Complemental strand, 26470054 - 26469972
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaatt 447  Q
    ||||| ||||||||||||||||||| |||||||||||||||| ||||| || | ||||||| |   |||||| ||||||||||    
T  26470054 tttaaaacagtgtatttgctaacacctttccttaattacacaccattatcttctttgattttcattaaataataaatttaatt 26469972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 415 - 454
Target Start/End: Original strand, 13085089 - 13085128
Alignment:
Q  415 tcccttgatttccgacaaataacaaatttaattgactgag 454  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  13085089 tcccttgatttccggcaaataacaaatttaattgactgag 13085128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 425
Target Start/End: Complemental strand, 4684566 - 4684518
Alignment:
Q  377 tatttgctaacacatttccttaattacacatcattacctcccttgattt 425  Q
    ||||||||||||| |||||||||||||||| ||||| |||| |||||||    
T  4684566 tatttgctaacacctttccttaattacacaccattatctcctttgattt 4684518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 420
Target Start/End: Original strand, 9113458 - 9113514
Alignment:
Q  365 tttaagacagtgtattt-gctaacacatttccttaattacacatcattacctccctt 420  Q
    ||||||| ||||||||| ||||| || |||||||||||||| |||||||||||||||    
T  9113458 tttaagagagtgtattttgctaaaacctttccttaattacagatcattacctccctt 9113514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 511
Target Start/End: Complemental strand, 35360425 - 35360380
Alignment:
Q  466 ttttcttgatcaattcttgataaaatctctcaagataaatagcaat 511  Q
    ||||||||||||||| ||||||||||||||| | ||||||| ||||    
T  35360425 ttttcttgatcaattattgataaaatctctctaaataaataacaat 35360380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 453
Target Start/End: Complemental strand, 47996767 - 47996699
Alignment:
Q  385 aacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactga 453  Q
    ||||| ||| ||||||||||  | |||||||||||| ||||||  | ||||| ||||||||||||||||    
T  47996767 aacaccttttcttaattacatttgattacctcccttaatttccagccaataagaaatttaattgactga 47996699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 329 - 515
Target Start/End: Complemental strand, 25493966 - 25493787
Alignment:
Q  329 aaatgatagatacagtgacaaactgtatcnnnnnnnttt-aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttcc 427  Q
    |||||||||||||||||||||  ||||||       ||| |||||||| |||||| ||| ||||||||||||||||||| |||||||||| ||||||||     
T  25493966 aaatgatagatacagtgacaacatgtatccagaaaatttcaagacagtatatttgttaatacatttccttaattacacaccattacctcctttgatttct 25493867  T
Q  428 gacaaataacaaatttaattgactgagggtctgagaccttttcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    |||||| |||||||||||||        | ||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  25493866 gacaaagaacaaatttaatt--------ggctgagacattttcttgatcaattcttgataaaaactctctagataaatagcaatgctc 25493787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 365 - 516
Target Start/End: Original strand, 3040258 - 3040401
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagac 464  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |  || |||||||||||||||||         ||||||    
T  3040258 tttaagacagtgtatttgctaacacctttccttaattacacaccattacctcccttgattttcaccagataacaaatttaattga--------ttgagac 3040349  T
Q  465 cttttcttgatcaattcttgataaaatctctcaagataaatagcaatgctca 516  Q
     |||||||||| |||||||||||||| ||||| || |||||| |||||||||    
T  3040350 attttcttgataaattcttgataaaaactctctaggtaaataacaatgctca 3040401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 371 - 516
Target Start/End: Original strand, 30735325 - 30735462
Alignment:
Q  371 acagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttc 470  Q
    ||||||||||||||||||| ||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||         |||||| |||||    
T  30735325 acagtgtatttgctaacactttttcttaattacccagcattacctcccttgatttccgccaaataacaaatttaattga--------ttgagacattttc 30735416  T
Q  471 ttgatcaattcttgataaaatctctcaagataaatagcaatgctca 516  Q
    |||||  |||||| |||||| || || |||||||||||||||||||    
T  30735417 ttgatatattcttaataaaaactatctagataaatagcaatgctca 30735462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 365 - 454
Target Start/End: Original strand, 30700868 - 30700957
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgag 454  Q
    ||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| |||| || |||||||||||||||||||| ||||    
T  30700868 tttaagacagtgtatttgctaacaccttttcttaattacacaacattacctcccttaattttcgtcaaataacaaatttaattgattgag 30700957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 365 - 515
Target Start/End: Complemental strand, 40519288 - 40519147
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagac 464  Q
    ||||||||||||||||||| || |  ||| |||||||||||||||||||||||| ||||||||  ||||||||||||||||||       ||| ||||||    
T  40519288 tttaagacagtgtatttgccaatattttttcttaattacacatcattacctccc-tgatttccatcaaataacaaatttaatt-------ggt-tgagac 40519198  T
Q  465 cttttcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
     | ||||| || |||||||||||||| ||||| ||||||||||||||||||    
T  40519197 ttattcttaataaattcttgataaaaactctctagataaatagcaatgctc 40519147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 365 - 516
Target Start/End: Complemental strand, 30071881 - 30071738
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagac 464  Q
    ||||||||| ||||||||||||| | |||||| ||||||||| || ||||| || |||||||| |||||||| ||||||||||       ||| ||||||    
T  30071881 tttaagacaatgtatttgctaactcctttcctcaattacacaccactaccttccatgatttccaacaaataataaatttaatt-------ggt-tgagac 30071790  T
Q  465 cttttcttgatcaattcttgataaaatctctcaagataaatagcaatgctca 516  Q
    ||||||||| | |||||| ||||||| ||||  |||||||||||||||||||    
T  30071789 cttttcttgttaaattctagataaaaactctttagataaatagcaatgctca 30071738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 374 - 449
Target Start/End: Complemental strand, 7547366 - 7547292
Alignment:
Q  374 gtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattga 449  Q
    ||||||||||||||||||||||||||||||| ||||||| || |||||||||||| |||||||||||||| |||||    
T  7547366 gtgtatttgctaacacatttccttaattacaaatcattatct-ccttgatttccgtcaaataacaaatttgattga 7547292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 496
Target Start/End: Complemental strand, 20360061 - 20359898
Alignment:
Q  328 gaaatgatagatacagtgacaaactgtatcnnnnnnnttt-aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttc 426  Q
    ||||||||||||| ||||||||||||||||       ||| ||||| || ||||||||||||| |||| ||||||||||| ||||| |||| ||||||||    
T  20360061 gaaatgatagatagagtgacaaactgtatcaagaaagtttcaagacggtatatttgctaacacctttctttaattacacaccattatctcctttgatttc 20359962  T
Q  427 cgacaaat--aacaaatttaattgactgagggtctgagaccttttcttgatcaattcttgataaaatctctc 496  Q
     |  ||||  |||| ||||||||||| |||        || |||||||||||||||||||||||||||||||    
T  20359961 aggaaaatttaacagatttaattgaccgag--------acattttcttgatcaattcttgataaaatctctc 20359898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 365 - 454
Target Start/End: Original strand, 34280104 - 34280193
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgag 454  Q
    |||||| ||||||||||| |||||  |||||||||||||| | ||||| || |||| ||||||| |||||||||||||||||||| ||||    
T  34280104 tttaagtcagtgtatttgttaacatctttccttaattacataccattatcttccttaatttccgccaaataacaaatttaattgattgag 34280193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 512
Target Start/End: Original strand, 35875827 - 35875876
Alignment:
Q  463 accttttcttgatcaattcttgataaaatctctcaagataaatagcaatg 512  Q
    |||||| ||||||||||||||||||||||||||| | |||||||||||||    
T  35875827 acctttccttgatcaattcttgataaaatctctctaaataaatagcaatg 35875876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 515
Target Start/End: Complemental strand, 21259238 - 21259186
Alignment:
Q  463 accttttcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    |||||||||| ||||||||||||||||| ||||| |||||||||  |||||||    
T  21259238 accttttctttatcaattcttgataaaaactctctagataaatataaatgctc 21259186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 511
Target Start/End: Complemental strand, 43591022 - 43590976
Alignment:
Q  465 cttttcttgatcaattcttgataaaatctctcaagataaatagcaat 511  Q
    |||||| |||||||||||| ||| |||||| ||||||||||||||||    
T  43591022 cttttcgtgatcaattcttaatataatctcgcaagataaatagcaat 43590976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 365 - 515
Target Start/End: Complemental strand, 34905956 - 34905814
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagac 464  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||  |||||||||||||||||| |        | |||||||    
T  34905956 tttaagacagtgtatttgctaacacctttccttaattatacatcattacctcctttgatttttgacaaataacaaatttaact--------ggctgagac 34905865  T
Q  465 cttttcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
     ||||||| |||||||||||||||||||| || ||||||||||||||||||    
T  34905864 attttcttaatcaattcttgataaaatctatctagataaatagcaatgctc 34905814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 328 - 515
Target Start/End: Original strand, 45852894 - 45853074
Alignment:
Q  328 gaaatgatagatacagtgacaaactgtatcnnnnnnnttt-aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttc 426  Q
    ||||||||||||| ||||||||||||||||       ||| ||||| |||||||||||||||| ||| |||||||||| ||||||| ||||||||||| |    
T  45852894 gaaatgatagataaagtgacaaactgtatcaagaaaattttaagaccgtgtatttgctaacaccttttcttaattacatatcattatctcccttgattgc 45852993  T
Q  427 cgacaaataacaaatttaattgactgagggtctgagaccttttcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
       ||||||| ||||||||||       ||| |||||| |||||||||| |||||||||||||||||||  ||||||||| ||||||||    
T  45852994 aagcaaataataaatttaatt-------ggt-tgagactttttcttgattaattcttgataaaatctctatagataaataacaatgctc 45853074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 368 - 448
Target Start/End: Complemental strand, 26443056 - 26442976
Alignment:
Q  368 aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattg 448  Q
    ||||||||||||||| |||||| |||  ||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  26443056 aagacagtgtatttggtaacaccttttgttaattacacaccattacctcccttgatttccgccaaataacaaatttaattg 26442976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 365 - 448
Target Start/End: Original strand, 18271961 - 18272044
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattg 448  Q
    ||||||| || |||||||||||||| |||| ||||||||||| |||||||||| |||||||||| |||||||||||||||||||    
T  18271961 tttaagatagagtatttgctaacacctttctttaattacacaccattacctccattgatttccgccaaataacaaatttaattg 18272044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 368 - 447
Target Start/End: Complemental strand, 1632915 - 1632836
Alignment:
Q  368 aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaatt 447  Q
    ||||||||||||||| |||||| |||| ||||||||||| |||||||||| ||||||||||  |||||||||||||||||    
T  1632915 aagacagtgtatttgttaacacgtttctttaattacacaccattacctcctttgatttccgcaaaataacaaatttaatt 1632836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 515
Target Start/End: Original strand, 48897685 - 48897820
Alignment:
Q  372 cagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttct 471  Q
    |||| ||||||||||||  ||| |||||||||||| |||||  ||| ||||||| ||||||||||||||||||| |   ||     |||| || |||| |    
T  48897685 cagtctatttgctaacatcttttcttaattacacaccattatttccattgattttcgacaaataacaaatttaact---tg-----ctgaaacatttttt 48897776  T
Q  472 tgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    |||| |||||||||||||||||||| ||||||||||||||||||    
T  48897777 tgattaattcttgataaaatctctctagataaatagcaatgctc 48897820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 365 - 490
Target Start/End: Complemental strand, 2672013 - 2671896
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagac 464  Q
    |||||||||||||||||| |||||  |||||||||||||||||||||| ||||  |||||| |  | ||||||||||||||||        | |||| ||    
T  2672013 tttaagacagtgtatttgttaacatctttccttaattacacatcattatctcctctgattttcagccaataacaaatttaatt--------ggctgacac 2671922  T
Q  465 cttttcttgatcaattcttgataaaa 490  Q
    ||||||||||||||||||||||||||    
T  2671921 cttttcttgatcaattcttgataaaa 2671896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 454
Target Start/End: Complemental strand, 31192213 - 31192080
Alignment:
Q  322 ataagagaaatgatagatacagtgacaaactgtatcnnnnnnnttt-aagacagtgtatttgctaacacatttccttaattacacatcattacctccctt 420  Q
    ||||| ||||||||||||||||||| ||||||||||       ||| ||||||| ||||||||||| |  ||||||||||||||||  |||| ||| |||    
T  31192213 ataagggaaatgatagatacagtgataaactgtatcaagaaaattttaagacagggtatttgctaatatctttccttaattacacactattatctctctt 31192114  T
Q  421 gatttccgacaaataacaaatttaattgactgag 454  Q
     |||| | | ||||||||||||||||||| ||||    
T  31192113 aattttcaataaataacaaatttaattgattgag 31192080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 1713979 - 1714060
Alignment:
Q  368 aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattga 449  Q
    ||||||||||||||  ||||| |||| |||||||| |||  |||| ||||||| ||||||| ||||||||||||||||||||    
T  1713979 aagacagtgtatttattaacatattttcttaattatacacaattatctcccttaatttccgccaaataacaaatttaattga 1714060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 516
Target Start/End: Original strand, 3169336 - 3169387
Alignment:
Q  463 accttttcttgatcaattcttgataaaatctctcaagataaatagcaatgctca 516  Q
    |||||||||||||||||||||||||||| ||||  |||||||||||||| ||||    
T  3169336 accttttcttgatcaattcttgataaaaactct--agataaatagcaattctca 3169387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 447
Target Start/End: Original strand, 40840680 - 40840728
Alignment:
Q  399 attacacatcattacctcccttgatttccgacaaataacaaatttaatt 447  Q
    |||| |||||||||||||| |||||||||| ||||||| ||||||||||    
T  40840680 attatacatcattacctcctttgatttccgccaaataataaatttaatt 40840728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 428
Target Start/End: Original strand, 3169272 - 3169309
Alignment:
Q  391 tttccttaattacacatcattacctcccttgatttccg 428  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  3169272 tttccttaattacacctcattaccgcccttgatttccg 3169309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 371 - 515
Target Start/End: Complemental strand, 18738 - 18602
Alignment:
Q  371 acagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttc 470  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||||||| |||| |||||||||||||||||||||||        || |||| |||||    
T  18738 acagtgtatttgctaacacatttccttaattactcaccattatctcccttaattttcgacaaataacaaatttaattga--------ctaagactttttc 18647  T
Q  471 ttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    ||||||||||||| |||||||||||  ||||||||||||||||||    
T  18646 ttgatcaattcttaataaaatctctttagataaatagcaatgctc 18602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 328 - 515
Target Start/End: Complemental strand, 20143116 - 20142936
Alignment:
Q  328 gaaatgatagatacagtgacaaactgtatcnnnnnnnttt-aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttc 426  Q
    ||||||||||||||||||||||| | ||||       ||| |||| ||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||    
T  20143116 gaaatgatagatacagtgacaaaatttatcaagaaaatttcaagatagtgtattttctaacacctttccttaattacacatcattaccttccttgatttc 20143017  T
Q  427 cgacaaataacaaatttaattgactgagggtctgagaccttttcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    || ||||||| ||||||||||       ||| |||||| |||||||||| |||||||||||||| ||||| ||||||||| ||||||||    
T  20143016 cgccaaataataaatttaatt-------ggt-tgagactttttcttgataaattcttgataaaaactctctagataaataacaatgctc 20142936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 365 - 515
Target Start/End: Original strand, 38320198 - 38320340
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagac 464  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||  ||||||||||||||||||       ||| ||| |     
T  38320198 tttaagacagtgtatttgataacacatttccttatttacacatcattacctcctttgatttccaccaaataacaaatttaatt-------ggt-tgaaaa 38320289  T
Q  465 cttttcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    ||||||||||| |||||||||||||| ||||| ||||||||| | ||||||    
T  38320290 cttttcttgataaattcttgataaaaactctctagataaataacgatgctc 38320340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 365 - 515
Target Start/End: Complemental strand, 37714533 - 37714391
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagac 464  Q
    |||||| |||||||||||||||||| |||||||||||||||| ||||| |||| |||||||||  ||||||||||||||||||       ||| ||| ||    
T  37714533 tttaaggcagtgtatttgctaacacctttccttaattacacaccattatctcctttgatttccatcaaataacaaatttaatt-------ggt-tgatac 37714442  T
Q  465 cttttcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    ||||||||||| |||  ||||||||| ||||| ||||||||||||||||||    
T  37714441 cttttcttgataaatcattgataaaaactctctagataaatagcaatgctc 37714391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 13716714 - 13716850
Alignment:
Q  371 acagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttc 470  Q
    ||||||||||||||||||| ||| ||||||||||||  ||||||||| ||||||| || ||||| ||||||||||||       ||| |||||| |||||    
T  13716714 acagtgtatttgctaacaccttttcttaattacacactattacctcctttgattttcgccaaatcacaaatttaatt-------ggt-tgagactttttc 13716805  T
Q  471 ttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||||    
T  13716806 ttgataaattcttgataaaaactctctagataaatagcaatgctc 13716850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 371 - 515
Target Start/End: Original strand, 32976024 - 32976162
Alignment:
Q  371 acagtgtatttgctaacacatttccttaattacacatcatt--acctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttt 468  Q
    ||||||||||| ||||||| ||| |||||||||| | ||||  |||| | ||||||||||||||||||||||||||||||       || |||||| |||    
T  32976024 acagtgtatttactaacaccttttcttaattacataccattttaccttctttgatttccgacaaataacaaatttaattg-------gt-tgagacattt 32976115  T
Q  469 tcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||    
T  32976116 tcttgatcaattcttgataaaatctctctagataaatagcattgctc 32976162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 365 - 448
Target Start/End: Complemental strand, 14131266 - 14131183
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattg 448  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||||| |||||||||    
T  14131266 tttaagatagtgtatttgctaacacatttccttaattacacaccattatctcgcttgatttccgccaaataacagatttaattg 14131183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 365 - 450
Target Start/End: Original strand, 19945722 - 19945807
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgac 450  Q
    |||||||||||||||||| ||| |  |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||    
T  19945722 tttaagacagtgtatttgttaatatctttccttaattacacaccattacctcccttaatttccgtcaaataacaaatttaattgac 19945807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 365 - 444
Target Start/End: Complemental strand, 27007279 - 27007200
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaattta 444  Q
    |||||||||||||||||| |||||| ||||||||| ||||||  |||||||||||||||||||| |||||||||||||||    
T  27007279 tttaagacagtgtatttgttaacacttttccttaaatacacactattacctcccttgatttccgccaaataacaaattta 27007200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 377 - 510
Target Start/End: Complemental strand, 4434398 - 4434270
Alignment:
Q  377 tatttgctaacacatttccttaattacacatcattacctcc---cttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttcttg 473  Q
    ||||||| ||||||||| |||||||||||| ||||||||||   |||||||| || ||||||||||||||||||||        ||| ||||||||||||    
T  4434398 tatttgccaacacatttacttaattacacaccattacctcctcccttgattttcggcaaataacaaatttaattga--------ctgggaccttttcttg 4434307  T
Q  474 atcaattcttgataaaatctctcaagataaatagcaa 510  Q
    |||||||||| ||||||||||||   |||||||||||    
T  4434306 atcaattcttaataaaatctctctcaataaatagcaa 4434270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 365 - 453
Target Start/End: Complemental strand, 27407532 - 27407444
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactga 453  Q
    ||||||| | |||||||||||| ||||||||||||||||||| ||||| || ||||||||||||  |||||||||||||||||| ||||    
T  27407532 tttaagatactgtatttgctaatacatttccttaattacacagcattatcttccttgatttccggtaaataacaaatttaattggctga 27407444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 365 - 449
Target Start/End: Complemental strand, 35457510 - 35457426
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattga 449  Q
    ||||||| ||| |||||| ||||||||||||||||||||||| |||||||||| ||||||||||  |||||| ||||||||||||    
T  35457510 tttaagatagtatatttgttaacacatttccttaattacacaccattacctcctttgatttccgctaaataataaatttaattga 35457426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 377 - 448
Target Start/End: Complemental strand, 3167994 - 3167923
Alignment:
Q  377 tatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattg 448  Q
    ||||||||||||| |||| |||||||||||||||||||| | |||||||||||||||||| |||||||||||    
T  3167994 tatttgctaacacctttctttaattacacatcattaccttctttgatttccgacaaataataaatttaattg 3167923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 369 - 436
Target Start/End: Complemental strand, 31845520 - 31845453
Alignment:
Q  369 agacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataa 436  Q
    ||||||||||||||||||||  || ||||||||||||| ||||||||| |||||||||||||||||||    
T  31845520 agacagtgtatttgctaacatcttaccttaattacacaccattacctctcttgatttccgacaaataa 31845453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 366 - 441
Target Start/End: Original strand, 5881430 - 5881505
Alignment:
Q  366 ttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaat 441  Q
    |||| ||||| |||||||||| || ||||||||||||||||||||||| | ||||||||||||  |||||||||||    
T  5881430 ttaatacagtatatttgctaatacctttccttaattacacatcattacattccttgatttccggtaaataacaaat 5881505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 409 - 515
Target Start/End: Original strand, 37899545 - 37899643
Alignment:
Q  409 attacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttcttgatcaattcttgataaaatctctcaagataaatagc 508  Q
    ||||||||| ||||||| |||||||| |||||||||||||       || ||| ||||||||||||| |||| ||||||||| ||||| |||||||||||    
T  37899545 attacctcctttgattttcgacaaatcacaaatttaattg-------gt-tgaaaccttttcttgataaatttttgataaaaactctctagataaatagc 37899636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 448
Target Start/End: Original strand, 31645094 - 31645178
Alignment:
Q  365 tttaagacagtgtatttgctaacaca-tttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattg 448  Q
    ||||||| | |||||||||||||||  ||| ||||||||||||||||||| |  ||||||||||| ||||| | |||||||||||    
T  31645094 tttaagagaatgtatttgctaacacccttttcttaattacacatcattacgtttcttgatttccgccaaattaaaaatttaattg 31645178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 517
Target Start/End: Complemental strand, 31845452 - 31845401
Alignment:
Q  466 ttttcttgatcaattcttgataaaatctctcaagataaatagcaatgctcaa 517  Q
    ||||||| |||||||||||||||||||||||  |||||||| ||||||||||    
T  31845452 ttttcttaatcaattcttgataaaatctctctggataaataacaatgctcaa 31845401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 406
Target Start/End: Complemental strand, 31264906 - 31264827
Alignment:
Q  328 gaaatgatagatacagtgacaaactgtatcnnnnnnnttt-aagacagtgtatttgctaacacatttccttaattacaca 406  Q
    ||||||||||||||||||||||| | ||||       ||| |||| ||||||||||||||||| ||||||||||||||||    
T  31264906 gaaatgatagatacagtgacaaaatttatcaaacaaattttaagatagtgtatttgctaacacttttccttaattacaca 31264827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 373 - 518
Target Start/End: Original strand, 6784708 - 6784845
Alignment:
Q  373 agtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttctt 472  Q
    ||||||||||||||||| ||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||        | |||||| ||||| ||    
T  6784708 agtgtatttgctaacaccttttcttaattacacaccattatctcccttgatttccgacaaataacaaatttaatt--------ggctgagatcttttatt 6784799  T
Q  473 gatcaattcttgataaaatctctcaagataaatagcaatgctcaaa 518  Q
    ||| |||| ||||||||| ||||| |||||||||||||||||||||    
T  6784800 gataaattgttgataaaaactctctagataaatagcaatgctcaaa 6784845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 367 - 510
Target Start/End: Original strand, 32871753 - 32871888
Alignment:
Q  367 taagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagacct 466  Q
    ||||||||||||||| ||||||  ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||       ||| ||| ||||    
T  32871753 taagacagtgtatttactaacatttttccttaattacacactattacctcccttgatttccgtcaaataacaaatttaatt-------ggt-tgaaacct 32871844  T
Q  467 tttcttgatcaattcttgataaaatctctcaagataaatagcaa 510  Q
    ||||||||| |||||||||||||| ||||| |||||||||||||    
T  32871845 tttcttgataaattcttgataaaaactctctagataaatagcaa 32871888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 368 - 515
Target Start/End: Complemental strand, 28867292 - 28867153
Alignment:
Q  368 aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagacctt 467  Q
    |||||| |||||||||||| ||||||||||||||||| |  ||||||||| ||||||||| |||||||||||||||||||||         ||| || ||    
T  28867292 aagacaatgtatttgctaaaacatttccttaattacatactattacctcctttgatttccaacaaataacaaatttaattga--------ttgaaacttt 28867201  T
Q  468 ttcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    ||||| ||||||||||||||||||||||  ||||||||| ||||||||    
T  28867200 ttcttaatcaattcttgataaaatctctttagataaataacaatgctc 28867153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 378 - 492
Target Start/End: Complemental strand, 6519337 - 6519231
Alignment:
Q  378 atttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttcttgatca 477  Q
    |||||||||| ||||| ||||||||||||||||||| ||| ||||||| || |||||||||||||||||||||        |||||| ||||||||||||    
T  6519337 atttgctaactcattttcttaattacacatcattacatcctttgattttcggcaaataacaaatttaattgac--------tgagacattttcttgatca 6519246  T
Q  478 attcttgataaaatc 492  Q
    ||| |||||||||||    
T  6519245 atttttgataaaatc 6519231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 374 - 448
Target Start/End: Original strand, 2130499 - 2130573
Alignment:
Q  374 gtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattg 448  Q
    |||||||||||||||| ||||||||||||||||  || |||||| |||||||||| |||||||||||||||||||    
T  2130499 gtgtatttgctaacacctttccttaattacacacaatcacctcctttgatttccgccaaataacaaatttaattg 2130573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 515
Target Start/End: Complemental strand, 34713649 - 34713469
Alignment:
Q  328 gaaatgatagatacagtgacaaactgtatcnnnnnnnttt-aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttc 426  Q
    ||||||||||||||||||||||| | ||||       ||| |||| |||||||||| |||||| ||| ||||| |||||| |||||| |||||||||||     
T  34713649 gaaatgatagatacagtgacaaaatttatcaagaaaattttaagatagtgtatttgttaacaccttttcttaaatacacaccattacatcccttgatttt 34713550  T
Q  427 cgacaaataacaaatttaattgactgagggtctgagaccttttcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    || ||||||||||||||||||     ||    ||||||  ||||||||| |||||||||||||| |||||   ||||||||||||||||    
T  34713549 cgccaaataacaaatttaatt-----ag---ttgagacaatttcttgataaattcttgataaaaactctctgaataaatagcaatgctc 34713469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 328 - 439
Target Start/End: Original strand, 3855696 - 3855807
Alignment:
Q  328 gaaatgatagatacagtgacaaactgtatcnnnnnnnttt-aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttc 426  Q
    ||||||||||||||||||||||| | ||||       ||| ||||||||||||| |||||||| ||||||||||||||||| ||||| |||||| |||||    
T  3855696 gaaatgatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatt-gctaacacctttccttaattacacattattacatcccttaatttc 3855794  T
Q  427 cgacaaataacaa 439  Q
    || ||||||||||    
T  3855795 cgtcaaataacaa 3855807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 511
Target Start/End: Complemental strand, 11301938 - 11301808
Alignment:
Q  373 agtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttctt 472  Q
    ||||||||| ||||||  |||||||||||| | |  |||||||  |||||||| ||| |||||||||||| |||||||||||        |||||||| |    
T  11301938 agtgtatttcctaacatctttccttaattatatactattaccttgcttgattttcgagaaataacaaattcaattgactgag--------accttttcat 11301847  T
Q  473 gatcaattcttgataaaatctctcaagataaatagcaat 511  Q
    ||||||||||||||||||  |||| | ||||||||||||    
T  11301846 gatcaattcttgataaaaattctctatataaatagcaat 11301808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 365 - 448
Target Start/End: Original strand, 42504192 - 42504275
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattg 448  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42504192 tttaagacagtgtatttgttaacacctttccttaattacacatcattacctcccttgatttccggcaaataacaaatttaattg 42504275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 365 - 515
Target Start/End: Complemental strand, 24060686 - 24060544
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagac 464  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||  || ||||||||||||||||     ||   || ||||    
T  24060686 tttaaaacagtgtatttgctaacacatttccttaattacacaccattatctcccttgatttctaaccaataacaaatttaatt-----ag---cttagac 24060595  T
Q  465 cttttcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
     |||||||||||||||||||||||||  |||  ||||||||| ||||||||    
T  24060594 attttcttgatcaattcttgataaaaattctttagataaataacaatgctc 24060544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 383 - 502
Target Start/End: Complemental strand, 25817757 - 25817646
Alignment:
Q  383 ctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttcttgatcaattct 482  Q
    ||||||||||| |||||||||||| ||||||||| ||||||||||| ||||||||||||||||||        | |||||||||||||||||||||||||    
T  25817757 ctaacacattttcttaattacacaccattacctcacttgatttccgtcaaataacaaatttaatt--------ggctgagaccttttcttgatcaattct 25817666  T
Q  483 tgataaaatctctcaagata 502  Q
    ||||||||| |||| |||||    
T  25817665 tgataaaatgtctctagata 25817646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 328 - 496
Target Start/End: Complemental strand, 5288670 - 5288509
Alignment:
Q  328 gaaatgatagatacagtgacaaactgtatcnnnnnnnttt-aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttc 426  Q
    ||||||||||||| ||||||||||||||||       ||| ||||| || |||||||||||||||||  ||||||||||| ||||| ||||||||||||     
T  5288670 gaaatgatagatagagtgacaaactgtatcaagaaagtttcaagacggtatatttgctaacacatttttttaattacacaccattatctcccttgattta 5288571  T
Q  427 cgacaaataacaaatttaattgactgagggtctgagaccttttcttgatcaattcttgataaaatctctc 496  Q
    || ||||||||||||||||||        | ||||||| ||||||| |||||||||| ||||||||||||    
T  5288570 cggcaaataacaaatttaatt--------ggctgagacattttcttaatcaattcttaataaaatctctc 5288509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 365 - 448
Target Start/End: Complemental strand, 30220809 - 30220727
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattg 448  Q
    ||||||||||||||||||||||||| |||||||||||||||| || || ||||||||||||||| | ||||||||| |||||||    
T  30220809 tttaagacagtgtatttgctaacacttttccttaattacacaccaata-ctcccttgatttccggccaataacaaaattaattg 30220727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 365 - 511
Target Start/End: Complemental strand, 16528676 - 16528535
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacc---tcccttgatttccgacaaataacaaatttaattgactgagggtctga 461  Q
    ||||||| |||||||||| ||||||||||| ||||||||||| |||||     ||  |||||||||||||||||||||||||||||| |||||           
T  16528676 tttaagatagtgtatttgttaacacatttctttaattacacaccattaatatatcatttgatttccgacaaataacaaatttaattggctgag------- 16528584  T
Q  462 gaccttttcttgatcaattcttgataaaatctctcaagataaatagcaat 511  Q
     ||||| | ||||||||||||  |||||||||||| ||||||||||||||    
T  16528583 -accttctattgatcaattctaaataaaatctctctagataaatagcaat 16528535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 384 - 448
Target Start/End: Complemental strand, 19482609 - 19482545
Alignment:
Q  384 taacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattg 448  Q
    |||||| |||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||    
T  19482609 taacacctttccttaattacacaccattacttcccttgatttccgccaaataacaaatttaattg 19482545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 368 - 515
Target Start/End: Complemental strand, 37762914 - 37762773
Alignment:
Q  368 aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagacctt 467  Q
    |||||| |||||||| |||||| ||||||||||||||||||||||  ||| |||| || || ||||||||||||||||||      || | || | | ||    
T  37762914 aagacaatgtatttgttaacacttttccttaattacacatcattatttcctttgactttcgtcaaataacaaatttaatt------ggttgtgtggcatt 37762821  T
Q  468 ttcttgatcaattcttgataaaatctctcaagataaatagcaatgctc 515  Q
    |||||||| |||||||||| ||| ||||  ||||||||||||||||||    
T  37762820 ttcttgataaattcttgatgaaaactctttagataaatagcaatgctc 37762773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 284
Target Start/End: Complemental strand, 106934 - 106808
Alignment:
Q  158 aaactgcaatggaaggcaacataatccctttacgatattcagctagagcccacattgggaatatatctctaaacattgcgtaatgcagcatgcagttttt 257  Q
    |||||||| ||||||||||   || || | ||||||| || |||||||||||||  ||| | ||||||||| |||||| |||||||| ||| || |||||    
T  106934 aaactgcagtggaaggcaatggaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaattttt 106835  T
Q  258 catgaatactgctgtgagttcctgcca 284  Q
    |||||||||| |||||| |||||||||    
T  106834 catgaatactcctgtgatttcctgcca 106808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 454
Target Start/End: Original strand, 29065295 - 29065365
Alignment:
Q  384 taacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgag 454  Q
    |||||| |||| ||||||||||| |||||||||| |||||||||| |||||||||||||||||||| ||||    
T  29065295 taacacctttctttaattacacaccattacctccattgatttccgtcaaataacaaatttaattgattgag 29065365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 51304297 - 51304381
Alignment:
Q  365 tttaagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattga 449  Q
    ||||||||| |||||||||||||| ||||  |||||| |||  ||||| |||| |||||||||| ||||||||||||||||||||    
T  51304297 tttaagacaatgtatttgctaacatatttttttaattgcacgccattatctcctttgatttccgtcaaataacaaatttaattga 51304381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 376 - 515
Target Start/End: Complemental strand, 41545514 - 41545383
Alignment:
Q  376 gtatttgctaacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttcttgat 475  Q
    |||||||||||||| |||| |||||||||||  ||||||| | | |||||| | |||||||||||||||||||  |||||        ||||||||||||    
T  41545514 gtatttgctaacacctttcattaattacacacaattaccttcttcgatttctgccaaataacaaatttaattggttgagg--------ccttttcttgat 41545423  T
Q  476 caattcttgataaaatctctcaagataaatagcaatgctc 515  Q
     ||||||||||  || ||||| |||||||||| |||||||    
T  41545422 aaattcttgatggaaactctctagataaatagtaatgctc 41545383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 167031 - 166955
Alignment:
Q  188 tacgatattcagctagagcccacattgggaatatatctctaaacattgcgtaatgcagcatgcagtttttcatgaat 264  Q
    ||||||| || | ||||||||||| |||||| ||||||||| |||||| |||||||| ||| || ||||||||||||    
T  167031 tacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaat 166955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 515
Target Start/End: Original strand, 2765385 - 2765505
Alignment:
Q  384 taacacatttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttcttgatcaattctt 483  Q
    |||||| |||| ||||||||||||||||| ||||| ||||||  | | ||||||||||||||||        | || |||||||||||||||||| ||||    
T  2765385 taacacctttcattaattacacatcattatctcccatgatttttggccaataacaaatttaatt--------ggcttagaccttttcttgatcaactctt 2765476  T
Q  484 gataaaatctctcaagataaatagcaatgctc 515  Q
     |||||| |||||   ||||||||||||||||    
T  2765477 aataaaaactctc---ataaatagcaatgctc 2765505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 463 - 504
Target Start/End: Complemental strand, 41485757 - 41485716
Alignment:
Q  463 accttttcttgatcaattcttgataaaatctctcaagataaa 504  Q
    |||||||||||||||||||||||||||| ||||| |||||||    
T  41485757 accttttcttgatcaattcttgataaaaactctctagataaa 41485716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 438
Target Start/End: Original strand, 27069 - 27180
Alignment:
Q  328 gaaatgatagatacagtgacaaactgtatcnnnnnnnttt-aagacagtgtatttgctaacacatttccttaattacacatcattacctcccttgatttc 426  Q
    ||||||||||||||||||||||| | ||||       ||| ||||||||||||||| |||||| |||||||||||||||   |||| |||||||||||||    
T  27069 gaaatgatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgttaacacctttccttaattacactctattatctcccttgatttc 27168  T
Q  427 cgacaaataaca 438  Q
    || |||||||||    
T  27169 cgccaaataaca 27180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 282
Target Start/End: Original strand, 88573 - 88667
Alignment:
Q  188 tacgatattcagctagagcccacattgggaatatatctctaaacattgcgtaatgcagcatgcagtttttcatgaatactgctgtgagttcctgc 282  Q
    ||||||| ||||| |||||||||| ||| || |||| |||| |||||| |||||||| ||| || ||||||||||||||| ||||||||||||||    
T  88573 tacgatactcagccagagcccacaatggaaaaatatttctatacattgggtaatgcaacatacaatttttcatgaatactcctgtgagttcctgc 88667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 391 - 506
Target Start/End: Original strand, 69949 - 70056
Alignment:
Q  391 tttccttaattacacatcattacctcccttgatttccgacaaataacaaatttaattgactgagggtctgagaccttttcttgatcaattcttgataaaa 490  Q
    |||||||||||||||  ||||| ||||||||||||||| | ||||||||||||||||        | |||| |||||||||||||||||| | |||||||    
T  69949 tttccttaattacaccccattatctcccttgatttccggccaataacaaatttaatt--------ggctgaaaccttttcttgatcaattttagataaaa 70040  T
Q  491 tctctcaagataaata 506  Q
     ||||| |||||||||    
T  70041 actctctagataaata 70056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 445
Target Start/End: Complemental strand, 19256 - 19220
Alignment:
Q  409 attacctcccttgatttccgacaaataacaaatttaa 445  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  19256 attacctcctttgatttccgtcaaataacaaatttaa 19220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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