View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_242 (Length: 240)
Name: NF20384_low_242
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_242 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 45141872 - 45141647
Alignment:
| Q |
1 |
tacaagtcctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagctacactggcagtacaaattatggatccacgg |
100 |
Q |
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| T |
45141872 |
tacaagtcctaagagaccatgtttggatgtaacataatcatggccacgatttccagcaacagaggcagctacactggcagtacaaattatggatccacgg |
45141773 |
T |
|
| Q |
101 |
atttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaatt |
200 |
Q |
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| T |
45141772 |
atttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaatt |
45141673 |
T |
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| Q |
201 |
ctagtatgctgctagacataccacct |
226 |
Q |
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| T |
45141672 |
ctagtatgctgctagacataccacct |
45141647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 45152465 - 45152329
Alignment:
| Q |
53 |
ccagcaacagaggcagctacactggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatc |
152 |
Q |
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| T |
45152465 |
ccagcaacaaagccagccacactagccgtgcaaattatggatccacgaatttttctttccaccataacacgcgcagcgtgcttgatagttgtagctgatc |
45152366 |
T |
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| Q |
153 |
cacgaacattaatggccatggtgttgtcaaattcatt |
189 |
Q |
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| T |
45152365 |
cacgaacattaatggccatggtgttgtcaaattcatt |
45152329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 210
Target Start/End: Complemental strand, 38256271 - 38256127
Alignment:
| Q |
66 |
cagctacactggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaat |
165 |
Q |
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||||||||||||| || |||||||| ||||| || |||||||| |||||||| | ||||| ||| |||||||||| ||| || ||||||| || | |
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| T |
38256271 |
cagctacactggctgtgcaaattattgatcctcgtatttttctttccaccattacacgtgaagcatgcttgatagttgcagctgcaccacgaatgttcac |
38256172 |
T |
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| Q |
166 |
ggccatggtgttgtcaaattcattcagatcaaattctagtatgct |
210 |
Q |
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| T |
38256171 |
agccatggtgttgtcaaattcatttaggttaaattctagtatgct |
38256127 |
T |
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