View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_243 (Length: 239)

Name: NF20384_low_243
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_243
NF20384_low_243
[»] chr3 (13 HSPs)
chr3 (19-220)||(9377109-9377310)
chr3 (12-218)||(9352917-9353123)
chr3 (65-185)||(9613844-9613964)
chr3 (138-187)||(9646292-9646341)
chr3 (138-187)||(9655285-9655334)
chr3 (148-187)||(9397933-9397972)
chr3 (148-183)||(9416719-9416754)
chr3 (148-187)||(9441712-9441751)
chr3 (12-97)||(9340687-9340772)
chr3 (12-97)||(9348003-9348088)
chr3 (12-97)||(9369657-9369742)
chr3 (138-187)||(9626408-9626457)
chr3 (147-187)||(9425718-9425758)
[»] chr2 (1 HSPs)
chr2 (12-56)||(20694357-20694401)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 9377109 - 9377310
Alignment:
Q  19 aacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttcctgttctcatcaagcttaaaaatcttcatactga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9377109 aacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttcctgttctcatcaagcttaaaaatcttcatactga 9377208  T
Q  119 attgaaaaaatgtctgatgaatgtccagcaacaacaactcaccctcactctccaccagcaattttctattcttaccacgaacacaacgttgatacaaagg 218  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9377209 attgaaaaaatgtctgatgaatgtccagtaacaacaactcaccctcactctccaccagcaattttctattcttaccacgaacacaacgttgatacaaagg 9377308  T
Q  219 at 220  Q
    ||    
T  9377309 at 9377310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 9352917 - 9353123
Alignment:
Q  12 agcagagaacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttcctgttctcatcaagcttaaaaatcttc 111  Q
    |||||| |||||||||||||||||||||||||||| |||| |||||||||| ||||||||| |||||||||||    |||||||||||||||| |  ||     
T  9352917 agcagaaaacgaacatccactccccacaaacaaaaccctaccccctaattttttcaacttcacccacttcttctccatctcatcaagcttaaagaatttg 9353016  T
Q  112 atactgaattgaaaaaatgtctgatgaatgtccagcaacaacaactcaccctcactctccaccagcaattttctattcttaccacgaacacaacgttgat 211  Q
    |||||||||||||||||||| |||||||||||||  |||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||| |||    
T  9353017 atactgaattgaaaaaatgtttgatgaatgtccaataacaacaactcaccctcattctccaccagcaattttctgttctcaccacgaacacaacgtcgat 9353116  T
Q  212 acaaagg 218  Q
    |||||||    
T  9353117 acaaagg 9353123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 9613964 - 9613844
Alignment:
Q  65 tcaacttctcccacttcttcctgttctcatcaagcttaaaaatcttcatactgaattgaaaaaatgtctgatgaatgtccagcaacaacaactcaccctc 164  Q
    |||||||| |||||||||||   |||||||||||||||||||  |  || ||||||||| | ||||  |||| ||||||||  |||||||||||||||||    
T  9613964 tcaacttcacccacttcttctccttctcatcaagcttaaaaaaatcaattctgaattgatacaatgattgataaatgtccaataacaacaactcaccctc 9613865  T
Q  165 actctccaccagcaattttct 185  Q
     ||||||||||||| ||||||    
T  9613864 gctctccaccagcatttttct 9613844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 9646341 - 9646292
Alignment:
Q  138 aatgtccagcaacaacaactcaccctcactctccaccagcaattttctat 187  Q
    |||||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  9646341 aatgtccaccaacaacaactcaccgtcactctccaccaacaattttctat 9646292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 9655334 - 9655285
Alignment:
Q  138 aatgtccagcaacaacaactcaccctcactctccaccagcaattttctat 187  Q
    |||||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  9655334 aatgtccaccaacaacaactcaccgtcactctccaccaacaattttctat 9655285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 9397933 - 9397972
Alignment:
Q  148 aacaacaactcaccctcactctccaccagcaattttctat 187  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  9397933 aacaacaactcactctcactctccaccagtaattttctat 9397972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 183
Target Start/End: Original strand, 9416719 - 9416754
Alignment:
Q  148 aacaacaactcaccctcactctccaccagcaatttt 183  Q
    ||||||||||||||||||||||||||||| ||||||    
T  9416719 aacaacaactcaccctcactctccaccagtaatttt 9416754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 9441751 - 9441712
Alignment:
Q  148 aacaacaactcaccctcactctccaccagcaattttctat 187  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  9441751 aacaacaactcgccctcactctccaccagtaattttctat 9441712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 9340687 - 9340772
Alignment:
Q  12 agcagagaacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttcctgttctcatcaa 97  Q
    |||||| ||||||||||||| ||| |  || |||| ||||||||| || ||| |||||||| |||||||||||   ||||||||||    
T  9340687 agcagaaaacgaacatccacgcccaatgaaaaaaaccctatccccgaaattcctcaacttcacccacttcttctccttctcatcaa 9340772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 9348003 - 9348088
Alignment:
Q  12 agcagagaacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttcctgttctcatcaa 97  Q
    |||||| ||||||||||||| ||| |  || |||||||||||||| || | | |||||||| |||||||||||   ||||||||||    
T  9348003 agcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctcaacttcacccacttcttctccttctcatcaa 9348088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 9369657 - 9369742
Alignment:
Q  12 agcagagaacgaacatccactccccacaaacaaaatcctatcccctaatttcttcaacttctcccacttcttcctgttctcatcaa 97  Q
    |||||| ||||||||||||| ||| |  || |||||||||||||| || | | |||||||| |||||||||||   ||||||||||    
T  9369657 agcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctcaacttcacccacttcttctccttctcatcaa 9369742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 9626457 - 9626408
Alignment:
Q  138 aatgtccagcaacaacaactcaccctcactctccaccagcaattttctat 187  Q
    ||||||||  |||||||||||||| ||||||||||||| || ||||||||    
T  9626457 aatgtccactaacaacaactcaccgtcactctccaccaacagttttctat 9626408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 9425718 - 9425758
Alignment:
Q  147 caacaacaactcaccctcactctccaccagcaattttctat 187  Q
    |||||||||  ||||||||||||||||||| ||||||||||    
T  9425718 caacaacaaggcaccctcactctccaccagtaattttctat 9425758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 20694401 - 20694357
Alignment:
Q  12 agcagagaacgaacatccactccccacaaacaaaatcctatcccc 56  Q
    |||||| |||||||||||| |||||| |||||||| |||||||||    
T  20694401 agcagaaaacgaacatccattccccaaaaacaaaaccctatcccc 20694357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University