View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_244 (Length: 239)
Name: NF20384_low_244
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_244 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 51651875 - 51651637
Alignment:
| Q |
1 |
actttgaactagtataagtgttcatgtagacaaacctgagtgacacctaatttatgtgccaacaaagaggcaacaatgtttccatcactgtagtttccaa |
100 |
Q |
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| T |
51651875 |
actttgaactagtataagtgttcatgtagacaaacctgagtgacacctaatttatgtgccaacaaagaggcaacaatgtttccatcactgtagtttccaa |
51651776 |
T |
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| Q |
101 |
caatcagatctggtttgccttgcaactctttggcaagctcatgagcaacatcctaatgacaagatacatataattggactgaatgttagactacaaataa |
200 |
Q |
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| T |
51651775 |
caatcagatctggtttgccttgcaactctttggcaagctcatgagcaacatcctaatgacaagatacatataattggactgaatgttagactacaaataa |
51651676 |
T |
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| Q |
201 |
aaataaacatcaaaatgtttggaaagtgattatggataa |
239 |
Q |
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| T |
51651675 |
aaataaacatcaaaatgtttggaaagtgattatggataa |
51651637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 19154045 - 19154178
Alignment:
| Q |
26 |
gtagacaaacctgagtgacacctaatttatgtgccaacaaagaggcaacaatgtttccatcactgtagtttccaacaatcagatctggtttgccttgcaa |
125 |
Q |
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|||||||||||||||| || ||||||||||| || |||||||||||||| |||||||| |||||||||||||| || |||||||| ||||| |||| ||| |
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| T |
19154045 |
gtagacaaacctgagttacgcctaatttatgagctaacaaagaggcaacgatgtttccgtcactgtagtttccgacgatcagatcaggttttccttccaa |
19154144 |
T |
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| Q |
126 |
ctctttggcaagctcatgagcaacatcctaatga |
159 |
Q |
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| T |
19154145 |
ctcctttgcaagttcattggcaacatcctaatga |
19154178 |
T |
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