View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20384_low_245 (Length: 239)

Name: NF20384_low_245
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20384_low_245
NF20384_low_245
[»] chr4 (13 HSPs)
chr4 (19-239)||(5570345-5570565)
chr4 (27-232)||(5582563-5582768)
chr4 (39-239)||(5538508-5538708)
chr4 (46-239)||(5894459-5894652)
chr4 (46-239)||(5559768-5559961)
chr4 (20-163)||(5852235-5852378)
chr4 (46-239)||(3749711-3749904)
chr4 (48-239)||(5613850-5614041)
chr4 (39-163)||(5554044-5554168)
chr4 (39-239)||(5858823-5859023)
chr4 (39-110)||(251816-251887)
chr4 (48-239)||(5885568-5885759)
chr4 (201-233)||(5352533-5352565)
[»] chr8 (1 HSPs)
chr8 (45-239)||(1486008-1486202)
[»] scaffold0454 (1 HSPs)
scaffold0454 (45-239)||(1191-1387)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 5570345 - 5570565
Alignment:
Q  19 cagaagacatctctgatggttttgataattcaagtagtctttttagtctccaacatcttcaaaaattgaacttggctgataacaatttcaattctgttat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5570345 cagaagacatctctgatggttttgataattcaagtagtctttttagtctccatcatcttcaaaaattgaacttggctgataacaatttcaattctgttat 5570444  T
Q  119 tccatcaggatttaacaaattggtgatgttgaattatctgaatttatcatatgctaactttgtggggcatatttatagagagatttctcagcttacaagg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  5570445 tccatcaggatttaacaaattggtgatgttgaattatctgaatttatcatatgctaactttgtggggcatatttctatagagatttctcagcttacaagg 5570544  T
Q  219 ttggttactcttgatctctct 239  Q
    |||||||||||||||||||||    
T  5570545 ttggttactcttgatctctct 5570565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 5582563 - 5582768
Alignment:
Q  27 atctctgatggttttgataattcaagtagtctttttagtctccaacatcttcaaaaattgaacttggctgataacaatttcaattctgttattccatcag 126  Q
    ||||||| ||| ||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  5582563 atctctggtggatttgataatgcaagcagtctttttagtcttcaacatcttcaaaaattgaacttggctgctaacaatttcaattctgtcattccatcag 5582662  T
Q  127 gatttaacaaattggtgatgttgaattatctgaatttatcatatgctaactttgtggggcatatttatagagagatttctcagcttacaaggttggttac 226  Q
    |||| ||||| ||||||||||||| |||| ||||||| ||||||||||||||||||||||| |||  || ||||||||||||||||||||||||||||||    
T  5582663 gattcaacaagttggtgatgttgagttatttgaatttgtcatatgctaactttgtggggcaaattcctatagagatttctcagcttacaaggttggttac 5582762  T
Q  227 tcttga 232  Q
    ||||||    
T  5582763 tcttga 5582768  T

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Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 39 - 239
Target Start/End: Original strand, 5538508 - 5538708
Alignment:
Q  39 tttgataattcaagtagtctttttagtctccaacatcttcaaaaattgaacttggctgataacaatttcaattctgttattccatcaggatttaacaaat 138  Q
    ||||||||| ||||||||||||||||||| ||| ||||||| |||||||||||||||| ||||||||||| ||||| ||||||| ||||||| ||||| |    
T  5538508 tttgataatacaagtagtctttttagtcttcaaaatcttcagaaattgaacttggctgctaacaatttcagttctgctattccaccaggattcaacaagt 5538607  T
Q  139 tggtgatgttgaattatctgaatttatcatatgctaactttgtggggcatatttatagagagatttctcagcttacaaggttggttactcttgatctctc 238  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||| |||  |  ||||||||||||||||||||||||||| ||||| ||| ||||    
T  5538608 tggtgatgttgagttatctgaatttgtcatatgctaactttgtggggcagattcctttagagatttctcagcttacaaggttggtaactctagatatctc 5538707  T
Q  239 t 239  Q
    |    
T  5538708 t 5538708  T

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Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 239
Target Start/End: Original strand, 5894459 - 5894652
Alignment:
Q  46 attcaagtagtctttttagtctccaacatcttcaaaaattgaacttggctgataacaatttcaattctgttattccatcaggatttaacaaattggtgat 145  Q
    ||||||| |||||||| | ||||| ||||||  ||||| ||||||||||| ||||||||||||||||| | |||||||||||||| | |||||||| ||     
T  5894459 attcaagcagtcttttcaatctcctacatctcaaaaaactgaacttggcttataacaatttcaattctctaattccatcaggattcagcaaattggagaa 5894558  T
Q  146 gttgaattatctgaatttatcatatgctaactttgtggggcatatttatagagagatttctcagcttacaaggttggttactcttgatctctct 239  Q
    ||||| |||||||||||| ||| | |||| |||||||||||| |||   |  |||||||| || ||||||||||||||||||||||||||||||    
T  5894559 gttgacttatctgaatttgtcaaaggctagctttgtggggcagattccaattgagatttcacaacttacaaggttggttactcttgatctctct 5894652  T

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Target: chr4; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 5559961 - 5559768
Alignment:
Q  46 attcaagtagtctttttagtctccaacatcttcaaaaattgaacttggctgataacaatttcaattctgttattccatcaggatttaacaaattggtgat 145  Q
    ||||||| |||||||| ||| | ||||| || || ||| |||| |||||||||||| |||||||||||   |||||||||||||| ||||| |||| ||     
T  5559961 attcaagcagtcttttcagtttgcaacacctccagaaactgaatttggctgataactatttcaattcttccattccatcaggattcaacaagttggagaa 5559862  T
Q  146 gttgaattatctgaatttatcatatgctaactttgtggggcatatttatagagagatttctcagcttacaaggttggttactcttgatctctct 239  Q
    |||||  ||||||||||| |||||||||| |||||||||||| |||  |  ||||||||||||||| | |||||||||||||||||||||||||    
T  5559861 gttgacatatctgaatttgtcatatgctagctttgtggggcaaattcctgtagagatttctcagctcaaaaggttggttactcttgatctctct 5559768  T

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Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 5852235 - 5852378
Alignment:
Q  20 agaagacatctctgatggttttgataattcaagtagtctttttagtctccaacatcttcaaaaattgaacttggctgataacaatttcaattctgttatt 119  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||| |||| |||||| |||||   ||  |  |||| |||    
T  5852235 agaagatatctctgatggttttgataattcaagtagtcttttcagtctcgaacatctccagaaactgaatttggcttataacttgtttgaaactgtcatt 5852334  T
Q  120 ccatcaggatttaacaaattggtgatgttgaattatctgaattt 163  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||    
T  5852335 ccatcgggattcaacaagttggtgatgttgaattatctgaattt 5852378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 3749904 - 3749711
Alignment:
Q  46 attcaagtagtctttttagtctccaacatcttcaaaaattgaacttggctgataacaatttcaattctgttattccatcaggatttaacaaattggtgat 145  Q
    |||||||||||||||| ||||| |||||||| |||||||| ||||||||  | ||| |||||||||||   ||||||||| |||| | ||| ||||  |     
T  3749904 attcaagtagtcttttcagtcttcaacatctccaaaaattaaacttggcatacaaccatttcaattctcacattccatcaagattcatcaagttggataa 3749805  T
Q  146 gttgaattatctgaatttatcatatgctaactttgtggggcatatttatagagagatttctcagcttacaaggttggttactcttgatctctct 239  Q
    |||||  ||||||||||| ||| | |||| |||||| ||||| |||   |  |||||||| ||||||||||||||||||| |||||||||||||    
T  3749804 gttgacatatctgaatttgtcacaagctagctttgtagggcagattccgattgagatttcgcagcttacaaggttggttattcttgatctctct 3749711  T

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Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 239
Target Start/End: Complemental strand, 5614041 - 5613850
Alignment:
Q  48 tcaagtagtctttttagtctccaacatcttcaaaaattgaacttggctgataacaatttcaattctgttattccatcaggatttaacaaattggtgatgt 147  Q
    |||||||||||||| | ||||| ||||||  | ||| ||||||||||| ||||  |||| ||||||   |||||||||| ||| ||||| ||||||| ||    
T  5614041 tcaagtagtcttttcaatctcctacatctcaagaaactgaacttggctaataattatttaaattcttccattccatcagcattcaacaagttggtgaagt 5613942  T
Q  148 tgaattatctgaatttatcatatgctaactttgtggggcatatttatagagagatttctcagcttacaaggttggttactcttgatctctct 239  Q
    | | ||||||  |||| ||||||  | | ||||||||||| |||   | ||||||||| ||||| || ||||||||||||||||||||||||    
T  5613941 taacttatcttgatttgtcatataatgaatttgtggggcagattccaatagagatttcccagctcacgaggttggttactcttgatctctct 5613850  T

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Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 5554168 - 5554044
Alignment:
Q  39 tttgataattcaagtagtctttttagtctccaacatcttcaaaaattgaacttggctgataacaatttcaattctgttattccatcaggatttaacaaat 138  Q
    ||||||| ||||||||||||||| |||||| | ||||| || ||| |||| |||||| |||||   ||| |  || | |||||||||||||| |||||||    
T  5554168 tttgatagttcaagtagtcttttcagtctcgatcatctccagaaactgaatttggcttataacttgttcgaaactttcattccatcaggattcaacaaat 5554069  T
Q  139 tggtgatgttgaattatctgaattt 163  Q
    ||||||||||||||||||| |||||    
T  5554068 tggtgatgttgaattatcttaattt 5554044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 239
Target Start/End: Complemental strand, 5859023 - 5858823
Alignment:
Q  39 tttgataattcaagtagtctttttagtctccaacatcttcaaaaattgaacttggctgataacaatttcaattctgttattccatcaggatttaacaaat 138  Q
    ||||| ||| |||| ||||| ||| ||||||||||||| |||||| |||||||||||  ||||||||||||||||   |||||||||| ||| |||||      
T  5859023 tttgaaaatacaagcagtctatttggtctccaacatctccaaaaagtgaacttggcttttaacaatttcaattcttccattccatcagcattcaacaagc 5858924  T
Q  139 tggtgatgttgaattatctgaatttatcatatgctaactttgtggggcatatttatagagagatttctcagcttacaaggttggttactcttgatctctc 238  Q
    ||| || |||||  ||||||||| |  || ||||||  |||   ||| | |||   | ||| ||||| ||||||| ||||||||||||||||||| ||||    
T  5858923 tggagaagttgacatatctgaatcttacagatgctagatttcacgggaagattccaatagaaatttcccagcttataaggttggttactcttgatatctc 5858824  T
Q  239 t 239  Q
    |    
T  5858823 t 5858823  T

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Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 251816 - 251887
Alignment:
Q  39 tttgataattcaagtagtctttttagtctccaacatcttcaaaaattgaacttggctgataacaatttcaat 110  Q
    ||||| |||||||||||||||||  ||||||||||||| |||||| |||| ||||||| |||||||||||||    
T  251816 tttgacaattcaagtagtcttttctgtctccaacatctccaaaaactgaatttggctgctaacaatttcaat 251887  T

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Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 5885568 - 5885759
Alignment:
Q  48 tcaagtagtctttttagtctccaacatcttcaaaaattgaacttggctgataacaatttcaattctgttattccatcaggatttaacaaattggtgatgt 147  Q
    |||||||||||||| ||||||   |||||  | ||| ||||||||||||||||  |||| ||||||   ||||||||||  || ||||| |||| || ||    
T  5885568 tcaagtagtcttttcagtctcttgcatctcaagaaactgaacttggctgataattatttaaattcttccattccatcagctttcaacaagttggagaagt 5885667  T
Q  148 tgaattatctgaatttatcatatgctaactttgtggggcatatttatagagagatttctcagcttacaaggttggttactcttgatctctct 239  Q
    ||| |||||||||||| ||| |||||   |||  |||| | |||   |  |||||||| || |||||||||||||||||||||||| |||||    
T  5885668 tgacttatctgaatttgtcagatgctggatttcagggggagattccaattgagatttcccatcttacaaggttggttactcttgatatctct 5885759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 5352533 - 5352565
Alignment:
Q  201 atttctcagcttacaaggttggttactcttgat 233  Q
    |||||||| ||||||||||||||||||||||||    
T  5352533 atttctcaccttacaaggttggttactcttgat 5352565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 45 - 239
Target Start/End: Complemental strand, 1486202 - 1486008
Alignment:
Q  45 aattcaagtagtctttttagtctccaacatcttcaaaaattgaacttggctgataacaatttcaattctgttattccatcaggatttaacaaattggtga 144  Q
    ||||||||||||||||||||||||||||||||  | | | | ||||| ||||| ||||  ||||||||| | || ||||||||||| |||||||||||||    
T  1486202 aattcaagtagtctttttagtctccaacatctcgagagactcaacttagctgaaaacagattcaattctctcatcccatcaggattcaacaaattggtga 1486103  T
Q  145 tgttgaattatctgaatttatcatatgctaactttgtggggcatatttatagagagatttctcagcttacaaggttggttactcttgatctctct 239  Q
    ||||||||||| ||||||| ||| |||||| |||||| ||| | |||  || ||||||||| || |||||||  ||||||||||||||| |||||    
T  1486102 tgttgaattatttgaatttgtcacatgctagctttgtaggggagattcctatagagatttcacaacttacaaatttggttactcttgatttctct 1486008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 239
Target Start/End: Complemental strand, 1387 - 1191
Alignment:
Q  45 aattcaagtagtcttttt-agtctccaacatcttcaaaaattgaacttggctgataacaatttcaattctgttattccatcaggatttaacaaattggtg 143  Q
    |||||||||||||||||| ||||||||||||||  | | | | ||||| ||||| ||||  ||||||||| | || ||||||||||| ||||||||||||    
T  1387 aattcaagtagtcttttttagtctccaacatctcgagagactcaacttagctgaaaacagattcaattctctcatcccatcaggattcaacaaattggtg 1288  T
Q  144 atgttgaa-ttatctgaatttatcatatgctaactttgtggggcatatttatagagagatttctcagcttacaaggttggttactcttgatctctct 239  Q
    |||||||| |||| ||||||| ||| |||||| |||||| ||| | |||  || ||||||||| || |||||||  ||||||||||||||| |||||    
T  1287 atgttgaatttatttgaatttgtcacatgctagctttgtaggggagattcctatagagatttcacaacttacaaatttggttactcttgatttctct 1191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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