View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20384_low_249 (Length: 237)
Name: NF20384_low_249
Description: NF20384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20384_low_249 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 32229935 - 32229726
Alignment:
| Q |
12 |
agagaagaaaatacgagaaaggaaacagaattgaataatatatatgcaacagaattaagaaaaatataaacagaggcaggatcagtaaagtaaagagcat |
111 |
Q |
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| T |
32229935 |
agagaagaaaatacgagaaaggaaacagaattgaataatatatatgcaacagaattaagaaaaatataaacagaggcaggatcagtaaagtaaagagcat |
32229836 |
T |
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| Q |
112 |
aactctattaccttacatattggatccaacttagtatatcctatcctatagattatatgataagatacacagtgctaacttatacacaata--cttagaa |
209 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
32229835 |
aactctgttaccttacatattggatccaacttagtatatcctatcctatagattatatgataagatacacagtgctaacttatacacaatactcttaaaa |
32229736 |
T |
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| Q |
210 |
gggatggcaa |
219 |
Q |
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|||||||||| |
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| T |
32229735 |
gggatggcaa |
32229726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 32225090 - 32224899
Alignment:
| Q |
12 |
agagaagaaaatacgagaaaggaaacagaattgaataatatatatgcaacagaattaagaaaaatataaaca----gaggcaggatcagtaaagtaaaga |
107 |
Q |
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|||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||| |||| |
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| T |
32225090 |
agagaacaaaataagagaaaggaaacagaattgaataataaatatgcaacagaattaggaaaaacataaacaatcagaggcaggatcagtaaagtgaaga |
32224991 |
T |
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| Q |
108 |
gcataactctattaccttacatattggatccaacttagtatatcctatcctatagattatatgataagatacacagtgctaacttatacaca |
199 |
Q |
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| T |
32224990 |
gcagagctctgttaccttacatattggatccaacttagtatatcctatcctatagtttatatgataagatacacagtgctaacttatacaca |
32224899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 32220424 - 32220388
Alignment:
| Q |
142 |
ttagtatatcctatcctatagattatatgataagata |
178 |
Q |
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||||||||||||||||||||||||| ||||||||||| |
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| T |
32220424 |
ttagtatatcctatcctatagattacatgataagata |
32220388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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